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View Structure Prediction Details

Protein: GATB_ARATH
Organism: Arabidopsis thaliana
Length: 550 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GATB_ARATH.

Description E-value Query
Range
Subject
Range
GATB_GEOUR - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter uraniireducens (strain Rf4) ...
741.0 [0..68] [548..1]

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Predicted Domain #1
Region A:
Residues: [1-550]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTLLRTIQ LNQFSLLGTS LLRRRRSNNF SVRSCGSQTT TTHEAKQSSP TRVAPKNHKS  60
   61 NQLDEILRDY EAVIGIETHV QLSTLTKAFC SCSNNYGSYP NTSICPVCMG LPGALPVLNS 120
  121 KVVEFGVRLG LALNCDLSLK SKFDRKQYFY PDLPKGYQIS QFDIPIASGG YVDVDIPLEF 180
  181 GGGHRRFGIT RVHMEEDAGK LLHSDTGDYS QVDLNRAGVP LLEIVSEPDM RSGIEAAEYA 240
  241 CEMQRIARYL GVSNGNMQEG SLRCDVNISI RPIGQAEFGT KVEIKNLNAF SAISRAIDFE 300
  301 ISRQALLYNQ GKADQIVTET RLWEEGAQKT VTMRKKEGLA DYRYFPEPDL PEVILTQEYV 360
  361 DSIRASLPEL PEAKRRRYEA MGLGMQDVLF LANDVSVAEY FDAVIGKGAE VKLAANWIMS 420
  421 DIAAYLKNEK LSINDIKLTP QELAELIAAI KDGTISGKIG KEILFELLAK GGTVKGMIKA 480
  481 KDLVQITDPA EIEKMVIQVV SENPKQLEQY RSGKTKLQGY FAGQVMKMSK GKANPGLLNK 540
  541 ILLEKLNAKD 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2df4B
Description: No description for 2df4B was found.

Predicted functions:

Term Confidence Notes
glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity 6.94703732461209 bayes_pls_golite062009
ligase activity 5.28014676041088 bayes_pls_golite062009
catalytic activity 1.08973967683802 bayes_pls_golite062009
binding 1.0468360119595 bayes_pls_golite062009
ammonia ligase activity 0.978763138251862 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.789800177023595 bayes_pls_golite062009
acid-ammonia (or amide) ligase activity 0.632807059205458 bayes_pls_golite062009
nucleic acid binding 0.545649763280687 bayes_pls_golite062009
protein binding 0.440356087696859 bayes_pls_golite062009
kinase activity 0.21984983699175 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.132389278472779 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle