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Protein Overview: ORTH5_ARATH

General Information:
Name(s) found: ORTH5_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • E3 ubiquitin-protein ligase ORTHRUS 5 OS=Arabidopsis thaliana GN=ORTH5 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 623 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: [NOT]DNA methylation on cytosine [IMP]
    protein ubiquitination [IDA]
    Molecular Function: ubiquitin-protein ligase activity [IDA]
    zinc ion binding [ISS]
    protein binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIQTQLPCD GDGVCMRCQV NPPSEETLTC GTCVTPWHVS CLLPESLASS TGDWECPDCS  60
   61 GVVVPSAAPG TGISGPESSG SVLVTAIRAI QADVTLTEAE KAKKRQRLMS GGGDDGVDDE 120
  121 EKKKLEIFCS ICIQLPERPV TTPCGHNFCL KCFEKWAVGQ GKLTCMICRS KIPRHVAKNP 180
  181 RINLALVSAI RLANVTKCSG EATAAKVHHI IRNQDRPDKA FTTERAVKTG KANAASGKFF 240
  241 VTIPRDHFGP IPAANDVTRN QGVLVGESWE DRQECRQWGV HFPHVAGIAG QAAVGAQSVA 300
  301 LSGGYDDDED HGEWFLYTGS GGRDLSGNKR VNKIQSSDQA FKNMNEALRL SCKMGYPVRV 360
  361 VRSWKEKRSA YAPAEGVRYD GVYRIEKCWS NVGVQGLHKM CRYLFVRCDN EPAPWTSDEH 420
  421 GDRPRPLPDV PELENATDLF VRKESPSWGF DEAEGRWKWM KSPPVSRMAL DTEERKKNKR 480
  481 AKKGNNAMKA RLLKEFSCQI CRKVLSLPVT TPCAHNFCKA CLEAKFAGIT QLRDRSNGVR 540
  541 KLRAKKNIMT CPCCTTDLSE FLQNPQVNRE MMEIIENFKK SEEEAEVAES SNISEEEGEE 600
  601 ESEPPTKKIK MDKNSVGGTS LSA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] FFAS03 3.3 No description for 2e6rA was found.
    2 View Details [103..244] PSI-BLAST 6.522879 No description for 2cklB was found.
    3 View Details [245..469] Pfam 74.39794 No description for PF02182.8 was found. No confident structure predictions are available.
    4 View Details [470..623] PSI-BLAST 17.0 RAG1 DIMERIZATION DOMAIN

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle