Protein Overview: gi|190404915

General Information:
Name(s) found:	gi\|190404915 [NCBI NR]
Description(s) found:	gi\|190404915\|gb\|EDV08182.1\| helix-loop-helix protein [Saccharomyces cerevisiae RM11-1a] [NCBI NR]
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	304 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQATGNELL GILDLDNDID FETAYQMLSS NFDDQMSAHI HENTFSATSP PLLTHELGII  60
   61 PNVATVQPSH VETIPADNQT HHAPLHTHAH YLNHNPHQPS MGFDQALGLK LSPSSSGLLS 120
  121 TNESNAIEQF LDNLISQDMM SSNASMNSES HLHIRSPKKQ HRYTELNQRY PETHPHSNTG 180
  181 ELPTNTADVP TEFTTREGPH QPIGNDHYNP PPFSVPEIRI PDSDIPANIE DDPVKVRKWK 240
  241 HVQMEKIRRI NTKEAFERLI KSVRTPPKEN GKRIPKHILL TCVMNDIKSI RSANEALQHI 300
  301 LDDS

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..214]	deduced	N/A	No confident structure predictions are available.
2	View Details	[215..304]	Pfam	2.522879	Helix-loop-helix DNA-binding domain No confident structure predictions are available.

Functions predicted (by domain):

#

Gene Ontology predictions

1

No functions predicted.

2

Term	Confidence	Notes
transcription regulator activity	5.08855036296174	bayes_pls_golite062009
DNA binding	4.87243318281876	bayes_pls_golite062009
nucleic acid binding	4.77537175825177	bayes_pls_golite062009
transcription factor activity	4.43134840465732	bayes_pls_golite062009
binding	3.63719401349018	bayes_pls_golite062009
transcription activator activity	3.62180682771335	bayes_pls_golite062009
sequence-specific DNA binding	3.17029130860224	bayes_pls_golite062009
RNA polymerase II transcription factor activity	3.11931609869373	bayes_pls_golite062009
protein binding	2.53793947976093	bayes_pls_golite062009
transcription factor binding	2.33137487648005	bayes_pls_golite062009
RNA polymerase II transcription factor activity, enhancer binding	2.01283700957804	bayes_pls_golite062009
transcription cofactor activity	1.30186253699056	bayes_pls_golite062009
transcription repressor activity	0.828519845330998	bayes_pls_golite062009
transcription corepressor activity	0.560586077390024	bayes_pls_golite062009
promoter binding	0.531949034115114	bayes_pls_golite062009
protein heterodimerization activity	0.328788240668351	bayes_pls_golite062009
transcription coactivator activity	0.172100901723138	bayes_pls_golite062009
protein dimerization activity	0.0815596840205237	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle