YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|221318794

General Information:
Name(s) found: gi|221318794 [NCBI NR]
Description(s) found:
  • gi|221318794|ref|ZP_03600088.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. subtilis str. JH642] [NCBI NR]
    • Organism: Bacillus subtilis subsp. subtilis str. JH642
    Length: 705 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQEKHVFTI DWAGRTLTVE TGQLAKQANG AVMIRYGDTA VLSTATASKE PKPLDFFPLT  60
   61 VNYEERLYAV GKIPGGFIKR EGRPSEKAVL ASRLIDRPIR PLFADGFRNE VQVISIVMSV 120
  121 DQNCSSEMAA MFGSSLALSV SDIPFEGPIA GVTVGRIDDQ FIINPTVDQL EKSDINLVVA 180
  181 GTKDAINMVE AGADEVPEEI MLEAIMFGHE EIKRLIAFQE EIVAAVGKEK SEIKLFEIDE 240
  241 ELNEKVKALA EEDLLKAIQV HEKHAREDAI NEVKNAVVAK FEDEEHDEDT IKQVKQILSK 300
  301 LVKNEVRRLI TEEKVRPDGR GVDQIRPLSS EVGLLPRTHG SGLFTRGQTQ ALSVCTLGAL 360
  361 GDVQILDGLG VEESKRFMHH YNFPQFSVGE TGPMRGPGRR EIGHGALGER ALEPVIPSEK 420
  421 DFPYTVRLVS EVLESNGSTS QASICASTLA MMDAGVPIKA PVAGIAMGLV KSGEHYTVLT 480
  481 DIQGMEDALG DMDFKVAGTE KGVTALQMDI KIEGLSREIL EEALQQAKKG RMEILNSMLA 540
  541 TLSESRKELS RYAPKILTMT INPDKIRDVI GPSGKQINKI IEETGVKIDI EQDGTIFISS 600
  601 TDESGNQKAK KIIEDLVREV EVGQLYLGKV KRIEKFGAFV EIFSGKDGLV HISELALERV 660
  661 GKVEDVVKIG DEILVKVTEI DKQGRVNLSR KAVLREEKEK EEQQS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..705] PSI-BLAST 152.0 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • exoribonuclease activity
    		•  7.55877202113513 bayes_pls_golite062009
  • ribonuclease activity
    		•  7.54644729272203 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  7.5310318714913 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  6.46930372693262 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  4.29895100594643 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  3.83939403332553 bayes_pls_golite062009
  • exonuclease activity
    		•  3.40686901061667 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.24341202600661 bayes_pls_golite062009
  • RNA binding
    		•  2.47373172667773 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  2.13956481798878 bayes_pls_golite062009
  • structural molecule activity
    		•  1.95031459523051 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.71222144385878 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.45130233071198 bayes_pls_golite062009
  • binding
    		•  1.38311294671926 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  1.35850109411274 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  1.35845277283398 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  1.35845277283398 bayes_pls_golite062009
    		• 1.2099360907571 bayes_pls_golite062009
  • exoribonuclease II activity
    		•  1.18248519339188 bayes_pls_golite062009
  • transcription termination factor activity
    		•  1.01993495617192 bayes_pls_golite062009
  • DNA binding
    		•  1.01454217691792 bayes_pls_golite062009
  • hydrolase activity
    		•  0.722411371082264 bayes_pls_golite062009
  • ATP-dependent peptidase activity
    		•  0.66778558090199 bayes_pls_golite062009
  • carbohydrate kinase activity
    		•  0.51810239718467 bayes_pls_golite062009
  • mRNA binding
    		•  0.403794675006504 bayes_pls_golite062009
  • tRNA-specific ribonuclease activity
    		•  0.383567539949931 bayes_pls_golite062009
  • ligase activity
    		•  0.346041081217685 bayes_pls_golite062009
  • transcription factor activity
    		•  0.298729064067577 bayes_pls_golite062009
  • protein binding
    		•  0.292595239533272 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
    		•  0.151650064901878 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.11625379846973 bayes_pls_golite062009
  • catalytic activity
    		•  0.10089766806364 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.0740938021136293 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.0740938021136293 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.0287026367466632 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle