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Protein Overview: gi|195335482, gi...

General Information:
Name(s) found: gi|195335482 [NCBI NR]
gi|194126364 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia] [NCBI NR]
  • gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia] [NCBI NR]
    • Organism: Drosophila sechellia
    Length: 634 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLYVGDLP QDVNESGLFD KFSSAGPVLS IRVCRDVITR RSLGYAYVNF QQPADAERAL  60
   61 DTMNFDLVRN KPIRIMWSQR DPSLRRSGVG NVFIKNLDRA IDNKAIYDTF SAFGNILSCK 120
  121 VATDEKGNSK GYGFVHFETE EAANTSIDKV NGMLLNGKKV YVGKFIPRKE REKELGEKAK 180
  181 LFTNVYVKNF TEDFDDEKLK EFFEPYGKIT SYKVMSKEDG KSKGFGFVAF ETTEAAEAAV 240
  241 QALNGKDMGE GKSLYVARAQ KKAERQQELK RKFEELKQKR HESVFGVNLY VKNLDDTIDD 300
  301 DRLRIAFSPY GNITSAKVMT DEEGRSKGFG FVCFNAASEA TCAVTELNGR VVGSKPLYVA 360
  361 LAQRKEERKA HLASQYMRHM TGMRMQQLGQ IYQPNAASGF FVPTLPSNQR FFGSQVATQM 420
  421 RNTPRWVPQV RPPAAIQGVQ AGAAAAGGFQ GTAGAVPTQF RSAAAGARGA QPQVQGTHAA 480
  481 AAAANNMRNT GARAITGQQT AAPNMQIPGA QIAGGAQQRT SNYKYTSNMR NPPVPQLHQT 540
  541 QPIPQQLQGK NSEKLIASLL ANAKPQEQKQ ILGERLYPMI EHMHANLAGK ITGMLLEIEN 600
  601 SELLHMIEDQ EALKAKVEEA VAVLQVHRVT EPAN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..168] PSI-BLAST 55.39794 Poly(A)-binding protein
    2 View Details [169..282] PSI-BLAST 17.0 No description for 2d9pA was found.
    3 View Details [283..406] FFAS03 4.49 CBP20, 20KDa nuclear cap-binding protein
    4 View Details [407..563] PSI-BLAST 4.39794 Sec24
    5 View Details [564..634] PSI-BLAST 30.0 poly(A) binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  6.73097473547076 bayes_pls_golite062009
  • mRNA binding
    		•  5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.92126426323641 bayes_pls_golite062009
    		• 4.45006565905155 bayes_pls_golite062009
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.93798024346416 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  2.79052809544187 bayes_pls_golite062009
  • structural molecule activity
    		•  2.78501986457503 bayes_pls_golite062009
  • poly(U) RNA binding
    		•  2.49013736906028 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.18211199677674 bayes_pls_golite062009
  • protein binding
    		•  2.17260848225967 bayes_pls_golite062009
  • DNA binding
    		•  1.98418556946403 bayes_pls_golite062009
  • hydrolase activity
    		•  1.59923957614061 bayes_pls_golite062009
  • snRNA binding
    		•  1.44241647066188 bayes_pls_golite062009
  • transcription factor activity
    		•  1.07843408116687 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.06887262556449 bayes_pls_golite062009
  • transcription activator activity
    		•  1.02778561397221 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.824614388276642 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.632534695085793 bayes_pls_golite062009
  • eukaryotic initiation factor 4G binding
    		•  0.597542453741953 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.383589644462932 bayes_pls_golite062009
  • translation regulator activity
    		•  0.38120065819101 bayes_pls_golite062009
  • U1 snRNA binding
    		•  0.290135317640781 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.128616879457381 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • RNA binding
    		•  6.32219487559982 bayes_pls_golite062009
  • mRNA binding
    		•  4.87640532914983 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.65259034341669 bayes_pls_golite062009
    		• 4.22120207254226 bayes_pls_golite062009
  • binding
    		•  3.48033873254013 bayes_pls_golite062009
  • structural molecule activity
    		•  2.79390010162962 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.55628738360472 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  2.38400992482878 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.2045206027152 bayes_pls_golite062009
  • poly(U) RNA binding
    		•  2.13305841145089 bayes_pls_golite062009
  • protein binding
    		•  2.10850948869511 bayes_pls_golite062009
  • DNA binding
    		•  1.99030664201171 bayes_pls_golite062009
  • hydrolase activity
    		•  1.62800695894716 bayes_pls_golite062009
  • snRNA binding
    		•  1.15643072278378 bayes_pls_golite062009
  • transcription factor activity
    		•  1.09958329302628 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.07516027015942 bayes_pls_golite062009
  • transcription activator activity
    		•  1.03081648377979 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.633093884585572 bayes_pls_golite062009
  • eukaryotic initiation factor 4G binding
    		•  0.468183942177665 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.462558743683805 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.327072171076297 bayes_pls_golite062009
  • translation regulator activity
    		•  0.246220338604608 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.0127733116412899 bayes_pls_golite062009
  • U1 snRNA binding
    		•  0.00409932271658597 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle