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Protein Overview: gi|213864870

General Information:
Name(s) found: gi|213864870 [NCBI NR]
Description(s) found:
  • gi|213864870|ref|ZP_03386989.1| type I restriction enzyme EcoKI subunit R [Salmonella enterica subsp. enterica serovar Typhi str. M223] [NCBI NR]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi str. M223
    Length: 1169 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKSNFDFLK GVNDFIYAIA CAAENNYPDD PNTTLIKMRM FGEATAKHLG QLLDIPVCEN  60
   61 QHDLLRELGK IAFIDDSILS VFHKLRRIGN LAVHEFHNDL DDAQMCLRLG FRLSVWYYRL 120
  121 VTKDYDFPVP MFVLPEHGEN LYHQEVLTLK QQLERQAQEK VQSQAELEAQ QQRLVALNGY 180
  181 IAILEGKQQE TEAQTKARLA ALEAQLAAKD AELAKQTEQE RKAYHKEITD QAIKRTLNLS 240
  241 EEESRFLIDA QLRKAGWQAD SKTLRFAKGA RPEPGVNKAI AEWPTGTDET GKTGFADYVL 300
  301 FVGLKPIAVV EAKRKNTDVF SKLNESYRYS KYFDNGFLRD TLLEHYAPDE VHDAVPEYEI 360
  361 SWQDTSGKQR FKIPFCYSTN GREYRAAMKT KSGIWYRDVR HTTNMSKALP EWHRPEELLD 420
  421 MLGSDPQKQN QWFAENPGMS ELGLRYYQED AVRAVEKAIV NGQQEILLAM ATGTGKTRTA 480
  481 IALMFRLIQS QRFKRVLFLV DRRSLGEQAL GSFEDTRING DTFNSIFDIK GLTDKFPEDS 540
  541 TKIHVATVQS LVKRTLQSDE PMPVGRYDCI VVDEAHRGYI LDKEQTEGEL QFRSQLDYVS 600
  601 AYRRILDHFD AVKIALTATP ALHTVEIFGE PVYRYTYRTA VIDGYLIDQD PPIQIVTRNA 660
  661 QDGVYLSEGE QVERLNPQGE LINDTLADDQ DFEVADFNRG LVIPAFNRAV CGELTKYLDP 720
  721 IGQQKTLVFC VTNAHADMVV DELRTAFKKK YPQLEHDAII KITGDADKDA KKVQSMIVRF 780
  781 NKERLPNIVV TVDLLTTGVD IPSICNIVFL RKVKSRILYE QMKGRATRLC PSVGKTSFKI 840
  841 YDCVDIYSSL ESVDTMRPVV VRPQVELQTL VNEITDSETY KTIEADGRSF AEHSHEQLVA 900
  901 KLQRIIGLAT YNRDHSETVD KQVRRLDELC LDAAGVNFGG LASRLREKGP HWSAEIFNKL 960
  961 PGFIARLERL KTDINALRDA PIFLDIDDEV VSVKSLYGDY DTPQDFLEAF DALVQHAPNA1020
 1021 QPALQAVINR PRDLTRKGLV ELQEWFDRQH FEESSLRSAW KETRNEDIAA RLIGHIRRAA1080
 1081 VGDALKPFDE RVDHALARIK GENDWSPEQL SWLDRLAQAL KEKVVLDDDV FKTGNFHRRG1140
 1141 GKSMLQRTFD DNLDSVLDKF SDYIWDELA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..99] FFAS03 1.05 Hypothetical cytosolic protein YutE from Bacillus subtilis
    2 View Details [100..997] PSI-BLAST 60.0 Crystal structure of Escherichia coli transcription-repair coupling factor
    3 View Details [998..1169] PSI-BLAST 71.0 Nucleotide excision repair enzyme UvrB

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • nucleoside-triphosphatase activity
    		•  2.16381244011837 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.13284212711072 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.11265775498161 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.11046854230259 bayes_pls_golite062009
  • hydrolase activity
    		•  1.66122526893602 bayes_pls_golite062009
  • ATPase activity
    		•  1.53315090215319 bayes_pls_golite062009
  • binding
    		•  1.41264401383678 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.1653223755451 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.923452757551011 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.923391844349459 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.920821955769652 bayes_pls_golite062009
  • nucleotide binding
    		•  0.917754212279227 bayes_pls_golite062009
  • helicase activity
    		•  0.895387263223335 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.8104901979223 bayes_pls_golite062009
  • ATP binding
    		•  0.60527666756293 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.573214556107072 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.554530910579109 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.216266069700019 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.0398638249772338 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle