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Protein Overview: gi|190409853

General Information:
Name(s) found: gi|190409853 [NCBI NR]
Description(s) found:
  • gi|190409853|gb|EDV13118.1| GATA family transcriptional repressor [Saccharomyces cerevisiae RM11-1a] [NCBI NR]
    • Organism: Saccharomyces cerevisiae RM11-1a
    Length: 269 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLSDSLKLP SPTLSAAAGV DDCDGEDHPT CQNCFTVKTP LWRRDEHGTV LCNACGLFLK  60
   61 LHGEPRPISL KTDTIKSRNR KKLNNNNVNT NANTHSNDPN KIFKRKKRLL TTGGGSLPTN 120
  121 NPKVSILEKF MVSGSIKPLL KPKETVPNTK ECSTQRGKFS LDPCEPSGKN YLYQINGSDI 180
  181 YTSNIELTRL PNLSTLLEPS PFSDSAVPEI ELTWKLHNEE EVIKLKTKIS ELELVTDLYK 240
  241 KHIFQLNEKC KQLEVELHSR ASVQSHPQH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..95] PSI-BLAST 176.08661 Erythroid transcription factor GATA-1
    2 View Details [96..269] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.00967542385368 bayes_pls_golite062009
  • binding
    		•  3.53535874483763 bayes_pls_golite062009
  • DNA binding
    		•  3.36252792779457 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.05528938535257 bayes_pls_golite062009
  • transcription factor activity
    		•  2.70303114587416 bayes_pls_golite062009
  • transcription activator activity
    		•  1.62405765585032 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.5397618957429 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.50210964370113 bayes_pls_golite062009
  • transcription factor binding
    		•  1.38523780690867 bayes_pls_golite062009
  • ligand-dependent nuclear receptor activity
    		•  1.37025623768659 bayes_pls_golite062009
  • protein binding
    		•  1.29473277650963 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.58115018700114 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.57492522309817 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.256420113528322 bayes_pls_golite062009
  • catalytic activity
    		•  0.101795606736461 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle