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Protein Overview: STR6_ARATH

General Information:
Name(s) found: STR6_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|18391002|ref|NP_563840.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15081791|gb|AAK82550.1| At1g09280/T12M4_1 [Arabidopsis thaliana] [NCBI NR]
  • gi|133778874|gb|ABO38777.1| At1g09280 [Arabidopsis thaliana] [NCBI NR]
  • Rhodanese-like domain-containing protein 6 OS=Arabidopsis thaliana GN=STR6 PE=2 SV=1 [Swiss-Prot]
  • At1g09280/T12M4_1 [Arabidopsis thaliana]gi|18391002|ref|NP_563840.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G40760.1); similar to Os12g0563400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067036.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN6471 [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g09280/T12M4_1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G40760.1); similar to Os12g0563400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067036.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64715.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17408.1); contains InterPro domain Protein of unknown function DUF341 (InterPro:IPR005645); contains InterPro domain Rhodanese-like (InterPro:IPR001763) | chr1:2998211-3001255 REVERSE [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source: NCBI BLink). | chr1:2998209-3001253 REVERSE LENGTH=581 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 581 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTSSCGDHE KQRIEDEEQY GVLLYYKYTS VPDLDELVSF YESSCNSLGL LGRVRLSPKG  60
   61 VNVTVGGKLT ALEEHIAAAK SNCLFEGTDF KLASCHHPLN DKVAEECGFT SLSIRVVEEL 120
  121 VTFSPCPPLK PPEISNAGKH LSAAEFHSVL QSANGKSENK ELVLLDARNL YETRIGKFES 180
  181 ENVETLDPEI RQYSDLPTWI DQNAEKMKGK NVLMYCTGGI RCEMASAYIR SKGAGFENTF 240
  241 QLYGGIQRYL EQFPSGGFFK GKNFVFDHRI SVGSSKEDII GSCLLCNNTF DDYSPRCRCR 300
  301 LCRMLVLVCN HCRVKGDIYI CELCRKHGKG EVPLSLDPLN QPSESNGDNT RRKLRILCLH 360
  361 GFRQNASSFK GRTGSLAKKL KNIAELVFID APHELQFIYQ TATPPSGVCN KKFAWLVSSD 420
  421 FDKPSETGWT VAQCQFDPLQ YQTQTEGFDK SLTYLKTAFE EKGPFDGILG FSQGAAMAAA 480
  481 VCGKQEQLVG EIDFRFCVLC SGFTPWPLLE MKEKRSIKCP SLHIFGSQPG KDRQIVTQAS 540
  541 SDLAGLFEDG CATIVEHDFG HIIPTKSPYI DEIKAFLYQF I

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..127] FFAS03 1.1 Crystal Structure of Acylphosphatase from Pyrococcus horikoshii
    2 View Details [128..332] PSI-BLAST 20.69897 No description for 2ifdA was found.
    3 View Details [333..581] PSI-BLAST 39.0 Acyl protein thioesterase 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.34848252540106 bayes_pls_golite062009
  • catalytic activity
    		•  0.310199228219135 bayes_pls_golite062009
  • hydrolase activity
    		•  0.271940296026722 bayes_pls_golite062009
  • protein binding
    		•  0.151377339372032 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0595404840031094 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.0590584113406907 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • hydrolase activity
    		•  0.900012765484033 bayes_pls_golite062009
  • catalytic activity
    		•  0.629869101256762 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.475177657121888 bayes_pls_golite062009
  • binding
    		•  0.424949448217625 bayes_pls_golite062009
  • carboxylesterase activity
    		•  0.0264147222103929 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle