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Protein Overview: SPT_ARATH

General Information:
Name(s) found: SPT_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 373 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: response to cold [IMP]
    carpel development [IMP]
    negative regulation of seed germination [IMP]
    fruit development [IMP]
    flower development [NAS]
    response to red light [IMP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS  60
   61 SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP PSDSVLMSKR VGDFSEVLIG 120
  121 GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA 180
  181 PSSKSGPSSR SSSKRCRAAE VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI 240
  241 EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS 300
  301 NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA 360
  361 LFDGQPDLKD RIT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..184] MSA 3.660996 View MSA. No confident structure predictions are available.
    2 View Details [185..281] PSI-BLAST 18.221849 Myc prot-oncogene protein
    3 View Details [282..373] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.12507195426228 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.43204604575196 bayes_pls_golite062009
  • DNA binding
    		•  0.40884226851256 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.31759335140578 bayes_pls_golite062009
  • transcription factor activity
    		•  0.09721565916723 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.79

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle