| Protein: | SPT_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 373 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPT_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
206.0 | [0..1] | [357..1] |
|
Region A: Residues: [1-184] |
1 11 21 31 41 51
| | | | | |
1 MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS 60
61 SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP PSDSVLMSKR VGDFSEVLIG 120
121 GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA 180
181 PSSK
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [185-281] |
1 11 21 31 41 51
| | | | | |
1 SGPSSRSSSK RCRAAEVHNL SEKRRRSRIN EKMKALQSLI PNSNKTDKAS MLDEAIEYLK 60
61 QLQLQVQMLT MRNGINLHPL CLPGTTLHPL QLSQIRP
|
| Detection Method: | |
| Confidence: | 18.221849 |
| Match: | 1nkpA |
| Description: | Myc prot-oncogene protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.12507195426228 | bayes_pls_golite062009 |
| nucleic acid binding | 0.43204604575196 | bayes_pls_golite062009 |
| DNA binding | 0.40884226851256 | bayes_pls_golite062009 |
| transcription regulator activity | 0.31759335140578 | bayes_pls_golite062009 |
| transcription factor activity | 0.09721565916723 | bayes_pls_golite062009 |
|
Region A: Residues: [282-373] |
1 11 21 31 41 51
| | | | | |
1 PEATNDPLLN HTNQFASTSN APEMINTVAS SYALEPSIRS HFGPFPLLTS PVEMSREGGL 60
61 THPRLNIGHS NANITGEQAL FDGQPDLKDR IT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
