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Protein Overview: CDC16_ARATH

General Information:
Name(s) found: CDC16_ARATH [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
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  • Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana GN=APC6 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 543 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: phloem or xylem histogenesis [IMP]
    cell cycle [ISS]
    regulation of DNA endoreduplication [IMP]
    Molecular Function: binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREEEIEKIR GVVRDCVSKH LYSSAIFFAD KVAALTNDPS DIYMQAQALF LGRHYRRAFH  60
   61 LLNASKIVLR DLRFRYLAAK CLEELKEWDQ CLLMLGDAKV DDDGIVYDAK DGNVIDFDKD 120
  121 GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE 180
  181 ESSLLSSLQF SPEDGWLSSF YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN 240
  241 TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN 300
  301 LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD 360
  361 QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF MQAKAICPSD PLVYNELGVV 420
  421 AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS 480
  481 TKSLSTYSGL AYTYHLQGNF SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV 540
  541 ELC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..447] PSI-BLAST 5.0 No description for 2ooeA was found.
    2 View Details [448..543] PSI-BLAST 59.0 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.71974493738804 bayes_pls_golite062009
  • protein binding
    		•  1.6279032205159 bayes_pls_golite062009
  • hydrolase activity
    		•  0.73439282112774 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.584434683111562 bayes_pls_golite062009
  • enzyme binding
    		•  0.44905827271946 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.41706917101675 bayes_pls_golite062009
  • DNA binding
    		•  0.31557320489611 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.244038930707726 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.215617899962405 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle