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Protein Overview: PUB11_ARATH

General Information:
Name(s) found: PUB11_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|172045744|sp|Q8GUG9.2|PUB11_ARATH RecName: Full=U-box domain-containing protein 11; AltName: Full=Plant U-box protein 11 [NCBI NR]
  • gi|15219996|ref|NP_173716.1| armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2 [Swiss-Prot]
  • armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | armadillo/beta-catenin repeat family protein / U-box domain-containing protein | chr1:8156734-8158831 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ubiquitin-protein ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | ARM repeat superfamily protein | chr1:8156745-8158842 FORWARD LENGTH=612 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 612 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: response to chitin [IEP]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS  60
   61 SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI SFQFQCVTWK LEKALSNLPY 120
  121 DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL 180
  181 ESVSETLHFG EEEEKQSSPP LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT 240
  241 IPVDFLCPVS LELMKDPVIV ATGQTYERAY IQRWIDCGNL TCPKTQQKLE NFTLTPNYVL 300
  301 RSLISRWCAE HNIEQPAGYI NGRTKNSGDM SVIRALVQRL SSRSTEDRRN AVSEIRSLSK 360
  361 RSTDNRILIA EAGAIPVLVN LLTSEDVATQ ENAITCVLNL SIYENNKELI MFAGAVTSIV 420
  421 QVLRAGTMEA RENAAATLFS LSLADENKII IGGSGAIPAL VDLLENGTPR GKKDAATALF 480
  481 NLCIYHGNKG RAVRAGIVTA LVKMLSDSTR HRMVDEALTI LSVLANNQDA KSAIVKANTL 540
  541 PALIGILQTD QTRNRENAAA ILLSLCKRDT EKLITIGRLG AVVPLMDLSK NGTERGKRKA 600
  601 ISLLELLRKA CQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..244] PSI-BLAST 24.221849 Crystal structure of the CHIP U-box E3 ubiquitin ligase
    2 View Details [245..612] PSI-BLAST 48.69897 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.02652482814057 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle