| Protein: | PUB11_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 612 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB11_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
388.0 | [0..1] | [612..7] |
|
Region A: Residues: [1-244] |
1 11 21 31 41 51
| | | | | |
1 MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS 60
61 SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI SFQFQCVTWK LEKALSNLPY 120
121 DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL 180
181 ESVSETLHFG EEEEKQSSPP LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT 240
241 IPVD
|
| Detection Method: |  |
| Confidence: | 24.221849 |
| Match: | 2c2lA |
| Description: | Crystal structure of the CHIP U-box E3 ubiquitin ligase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.02652482814057 | bayes_pls_golite062009 |
|
Region A: Residues: [245-612] |
1 11 21 31 41 51
| | | | | |
1 FLCPVSLELM KDPVIVATGQ TYERAYIQRW IDCGNLTCPK TQQKLENFTL TPNYVLRSLI 60
61 SRWCAEHNIE QPAGYINGRT KNSGDMSVIR ALVQRLSSRS TEDRRNAVSE IRSLSKRSTD 120
121 NRILIAEAGA IPVLVNLLTS EDVATQENAI TCVLNLSIYE NNKELIMFAG AVTSIVQVLR 180
181 AGTMEARENA AATLFSLSLA DENKIIIGGS GAIPALVDLL ENGTPRGKKD AATALFNLCI 240
241 YHGNKGRAVR AGIVTALVKM LSDSTRHRMV DEALTILSVL ANNQDAKSAI VKANTLPALI 300
301 GILQTDQTRN RENAAAILLS LCKRDTEKLI TIGRLGAVVP LMDLSKNGTE RGKRKAISLL 360
361 ELLRKACQ
|
| Detection Method: | |
| Confidence: | 48.69897 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.373576425899935 | bayes_pls_golite062009 |
