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Protein Overview: gi|15220798, gi|...

General Information:
Name(s) found: gi|67633374 [NCBI NR]
gi|15220798 [NCBI NR]
Description(s) found:
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  • gi|67633374|gb|AAY78612.1| putative disease resistance protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15220798|ref|NP_173205.1| disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana] [NCBI NR]
  • disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Disease resistance protein (TIR-NBS class) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | disease resistance protein (TIR-NBS class), putative | chr1:6059434-6060660 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative disease resistance protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transmembrane receptor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Disease resistance protein (TIR-NBS class) | chr1:6059441-6060667 FORWARD LENGTH=380 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Disease resistance protein (TIR-NBS class) OS=Arabidopsis thaliana GN=At1g17615 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 380 amino acids

    Gene Ontology:
    Cellular Component: intrinsic to membrane [IEA]
    Biological Process: signal transduction [IEA]
    innate immune response [IEA]
    defense response [ISS]
    Molecular Function: transmembrane receptor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSSSSSSSA TPQKFDVFLS FRGKDTRRTF ISFLYKELIE MGIRTFKDDV ELQSGRRIAS  60
   61 DLLAAIENSK IAVVIISKNY SASPWCLQEL VMIMDVEKKG SIIVMPIFYN VEPAHVRRQI 120
  121 EQVAKQFRKH EGRENYETVV SWRQALTNLA SISGHCSRDC EDDSKLLDEI TKRISDMLFS 180
  181 VTPPSESINN QLGFDARMKE LYPLLDLDSN EGVRVVGIWA RGGNGRSALA RYVYQKIFKK 240
  241 FQSHCFLENV KGIPHDCQMS NLRDEFLIRI QGGYSRMKTS GLIKKRLMSQ KVLLVANNVD 300
  301 KLEQLDALAE YFNCFGPGSI VLITTQDKQL LVAFGIKVVY EVECLRCFEV RQLFRQIGFR 360
  361 ERDLNVGSEL SSPISGTESS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..184] PSI-BLAST 14.154902 Toll-like receptor 1, TLR1
    2 View Details [185..380] PSI-BLAST 3.045757 Structure of a CED-4/CED-9 complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.261666574457319 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle