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Protein Overview: gi|110736370, gi...

General Information:
Name(s) found: gi|30688682 [NCBI NR]
gi|110736370 [NCBI NR]
Description(s) found:
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  • gi|30688682|ref|NP_197676.2| aspartyl protease family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110736370|dbj|BAF00154.1| protease-like protein [Arabidopsis thaliana] [NCBI NR]
  • aspartyl protease family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | aspartyl protease family protein | chr5:7633720-7636301 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • pepsin A [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • protease-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Eukaryotic aspartyl protease family protein | chr5:7633717-7636298 REVERSE LENGTH=493 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Aspartyl protease family protein OS=Arabidopsis thaliana GN=At5g22850 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 493 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: proteolysis [IEA][ISS]
    Molecular Function: aspartic-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAIRFAAAI LICCLLPAAV LSYGFPAALK LERVIPANHE MELSQLKARD EARHGRLLQS  60
   61 LGGVIDFPVD GTFDPFVVGL YYTKLRLGTP PRDFYVQVDT GSDVLWVSCA SCNGCPQTSG 120
  121 LQIQLNFFDP GSSVTASPIS CSDQRCSWGI QSSDSGCSVQ NNLCAYTFQY GDGSGTSGFY 180
  181 VSDVLQFDMI VGSSLVPNST APVVFGCSTS QTGDLVKSDR AVDGIFGFGQ QGMSVISQLA 240
  241 SQGIAPRVFS HCLKGENGGG GILVLGEIVE PNMVFTPLVP SQPHYNVNLL SISVNGQALP 300
  301 INPSVFSTSN GQGTIIDTGT TLAYLSEAAY VPFVEAITNA VSQSVRPVVS KGNQCYVITT 360
  361 SVGDIFPPVS LNFAGGASMF LNPQDYLIQQ NNVGGTAVWC IGFQRIQNQG ITILGDLVLK 420
  421 DKIFVYDLVG QRIGWANYDC STSVNVSATS SSGRSEYVNA GQFSENAAAP QKLSLDIVGN 480
  481 TLMLLLMVIN MFL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..493] PSI-BLAST 67.221849 REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.01508543827677 bayes_pls_golite062009
  • hydrolase activity
    		•  0.77554493777157 bayes_pls_golite062009
  • peptidase activity
    		•  0.68518523369811 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.43925265235199 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.43264884039584 bayes_pls_golite062009
  • aspartic-type endopeptidase activity
    		•  0.30585066730542 bayes_pls_golite062009
  • aspartic-type peptidase activity
    		•  0.30585066730542 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle