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Protein Overview: gi|42573003

General Information:
Name(s) found: gi|42573003 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|42573003|ref|NP_974598.1| Toll-Interleukin-Resistance (TIR) domain-containing protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 331 amino acids

    Gene Ontology:
    Cellular Component: membrane [ISS]
    Biological Process: signal transduction [IEA]
    innate immune response [IEA]
    defense response [ISS]
    Molecular Function: transmembrane receptor activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGITHYNKDQ VFISFRGKDE RNGLLTLLKQ KLIDGNVNVF TDDKLTGQPL QNLFGHIRKS  60
   61 RIAIVIFSKN YAESGWCLDE LVEIKKCFET EALKAVIPIF HRVKVSSVKK QSGKFGEKFL 120
  121 ALQNYLLAEE VDKKKIKRIN SRIKRWKKAL KIVTEIAGLT HDKNSPELAF VEKVVEKIIR 180
  181 HLASIAAEEG RNSTLETSET PPVIQPNQII YNVINIRLHR SKSLENFKLS YNPEEDNKSY 240
  241 DLKPSSPTLT RSASNLDHRD QYGPFPFEAL MVKKQNENQR SIANIVLKKT KTWHNLHFVS 300
  301 ALLFGALFVS YMQKPLFQDC TRTGFTFKKD H

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..189] PSI-BLAST 22.69897 Toll-like receptor 1, TLR1
    2 View Details [190..331] MSA 196.430997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.261666574457319 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.42

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle