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Protein Overview: ATL6_ARATH

General Information:
Name(s) found: ATL6_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 398 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: response to chitin [IEP]
    Molecular Function: zinc ion binding [IEA][ISS]
    protein binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL  60
   61 FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL DVSVVETFPT FLYSDVKTQK 120
  121 LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG 180
  181 ESVEPGGTEP DLELQQVVVN PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT 240
  241 TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR 300
  301 SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW 360
  361 RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..79] MSA 1.352995 View MSA. No confident structure predictions are available.
    2 View Details [80..173] PSI-BLAST 13.221849 EL5 RING-H2 domain
    3 View Details [174..398] MSA 4.301996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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