YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL  60
   61 FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL DVSVVETFPT FLYSDVKTQK 120
  121 LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG 180
  181 ESVEPGGTEP DLELQQVVVN PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT 240
  241 TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR 300
  301 SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW 360
  361 RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.85
Transmembrane Helix	7	28	0.87
Non-Cytoplasmic	29	47	0.82
Transmembrane Helix	48	70	0.89
Cytoplasmic	71	398	0.89