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Protein Overview: gi|42569085

General Information:
Name(s) found: gi|42569085 [NCBI NR]
Description(s) found:
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  • gi|42569085|ref|NP_179290.3| tetracycline transporter [Arabidopsis thaliana] [NCBI NR]
  • expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | tetracycline transporter | chr2:7383458-7387607 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • tetracycline transporter [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Major facilitator superfamily protein | chr2:7376376-7380525 FORWARD LENGTH=408 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Major facilitator protein OS=Arabidopsis thaliana GN=At2g16980 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of F4IMD7, Major facilitator protein OS=Arabidopsis thaliana GN=At2g16980 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 408 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEA]
    endomembrane system [IEA]
    Biological Process: response to antibiotic [IEA]
    tetracycline transport [IEA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVFRLGELR HLLVTVFLSG LAEYLIRPVM TDVTVAAVCS GLDDSCSLAV YLTGVQQVTV  60
   61 GMGTMVMMPV IGNLSDRYGI KAMLTLPMCL SVLPPAILGY RRDTNFFYAF YVIKTLFDMV 120
  121 CQGTIDCLAN AYVAKNVHGT KRISMFGILA GVSSISGVCA SLSARFLSIA STFQVAAISL 180
  181 FIGLVYMRVF LKERLQDADD DDEADSGGCR SHQEVHNGGD LKMLTEPILR DAPTKTHVFN 240
  241 SKYSSWKDMV SLINNSTILI QALVVTFFAT FSESGRGSAL MYFLKARFGF NKNDFAELFL 300
  301 LVTIIGSISQ LFILPTLSST IGERKVLSTG LLMEFFNATC LSVAWSPWVP YAMTMLVPGA 360
  361 MFVMPSVCGI ASRQVGSSEQ GKVQGCISGV RAFAQVVAPF VYSPLTGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..408] PSI-BLAST 19.522879 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle