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View Structure Prediction Details

Protein: gi|42569085
Organism: Arabidopsis thaliana
Length: 408 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42569085.

Description E-value Query
Range
Subject
Range
gi|46107656, gi|... - gi|46107656|ref|XP_380887.1| hypothetical protein FG00711.1 [Gibberella zeae PH-1], gi|42547814|gb|E...
282.0 [0..31] [406..1460]

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Predicted Domain #1
Region A:
Residues: [1-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVFRLGELR HLLVTVFLSG LAEYLIRPVM TDVTVAAVCS GLDDSCSLAV YLTGVQQVTV  60
   61 GMGTMVMMPV IGNLSDRYGI KAMLTLPMCL SVLPPAILGY RRDTNFFYAF YVIKTLFDMV 120
  121 CQGTIDCLAN AYVAKNVHGT KRISMFGILA GVSSISGVCA SLSARFLSIA STFQVAAISL 180
  181 FIGLVYMRVF LKERLQDADD DDEADSGGCR SHQEVHNGGD LKMLTEPILR DAPTKTHVFN 240
  241 SKYSSWKDMV SLINNSTILI QALVVTFFAT FSESGRGSAL MYFLKARFGF NKNDFAELFL 300
  301 LVTIIGSISQ LFILPTLSST IGERKVLSTG LLMEFFNATC LSVAWSPWVP YAMTMLVPGA 360
  361 MFVMPSVCGI ASRQVGSSEQ GKVQGCISGV RAFAQVVAPF VYSPLTGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.522879
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle