YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42569085
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.90
Transmembrane Helix	9	27	0.78
Non-Cytoplasmic	28	47	0.76
Transmembrane Helix	48	71	0.72
Cytoplasmic	72	78	0.70
Transmembrane Helix	79	99	0.76
Non-Cytoplasmic	100	109	0.59
Transmembrane Helix	110	129	0.61
Cytoplasmic	130	142	0.76
Transmembrane Helix	143	164	0.88
Non-Cytoplasmic	165	169	0.68
Transmembrane Helix	170	190	0.88
Cytoplasmic	191	251	0.97
Transmembrane Helix	252	272	0.90
Non-Cytoplasmic	273	297	0.86
Transmembrane Helix	298	317	0.93
Cytoplasmic	318	325	0.84
Transmembrane Helix	326	346	0.87
Non-Cytoplasmic	347	351	0.66
Transmembrane Helix	352	372	0.83
Cytoplasmic	373	408	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVFRLGELR HLLVTVFLSG LAEYLIRPVM TDVTVAAVCS GLDDSCSLAV YLTGVQQVTV  60
   61 GMGTMVMMPV IGNLSDRYGI KAMLTLPMCL SVLPPAILGY RRDTNFFYAF YVIKTLFDMV 120
  121 CQGTIDCLAN AYVAKNVHGT KRISMFGILA GVSSISGVCA SLSARFLSIA STFQVAAISL 180
  181 FIGLVYMRVF LKERLQDADD DDEADSGGCR SHQEVHNGGD LKMLTEPILR DAPTKTHVFN 240
  241 SKYSSWKDMV SLINNSTILI QALVVTFFAT FSESGRGSAL MYFLKARFGF NKNDFAELFL 300
  301 LVTIIGSISQ LFILPTLSST IGERKVLSTG LLMEFFNATC LSVAWSPWVP YAMTMLVPGA 360
  361 MFVMPSVCGI ASRQVGSSEQ GKVQGCISGV RAFAQVVAPF VYSPLTGK