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Protein Overview: gi|239782044, gi...

General Information:
Name(s) found: gi|73535939 [NCBI NR]
gi|239782044 [NCBI NR]
gi|239781876 [NCBI NR]
gi|170292244 [NCBI NR]
gi|170292243 [NCBI NR]
gi|13399894 [NCBI NR]
gi|13399888 [NCBI NR]
gi|13399886 [NCBI NR]
Description(s) found:
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  • gi|73535939|pdb|1ZGY|A Chain A, Structural And Biochemical Basis For Selective Repression Of The Orphan Nuclear Receptor Lrh-1 By Shp [NCBI NR]
  • gi|239782044|pdb|3H0A|D Chain D, Crystal Structure Of Peroxisome Proliferator-Activated Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha (Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator Peptide, And A Partial Agonist [NCBI NR]
  • gi|239781876|pdb|3FUR|A Chain A, Crystal Structure Of Pparg In Complex With Int131 [NCBI NR]
  • gi|170292244|pdb|2POB|B Chain B, Ppargamma Ligand Binding Domain Complexed With A Farglitazar Analogue Gw4709 [NCBI NR]
  • gi|170292243|pdb|2POB|A Chain A, Ppargamma Ligand Binding Domain Complexed With A Farglitazar Analogue Gw4709 [NCBI NR]
  • gi|13399894|pdb|1FM9|D Chain D, The 2.1 Angstrom Resolution Crystal Structure Of The Heterodimer Of The Human Rxralpha And Ppargamma Ligand Binding Domains Respectively Bound With 9-Cis Retinoic Acid And Gi262570 And Co-Activator Peptides. [NCBI NR]
  • gi|13399888|pdb|1FM6|X Chain X, The 2.1 Angstrom Resolution Crystal Structure Of The Heterodimer Of The Human Rxralpha And Ppargamma Ligand Binding Domains Respectively Bound With 9-Cis Retinoic Acid And Rosiglitazone And Co-Activator Peptides. [NCBI NR]
  • gi|13399886|pdb|1FM6|D Chain D, The 2.1 Angstrom Resolution Crystal Structure Of The Heterodimer Of The Human Rxralpha And Ppargamma Ligand Binding Domains Respectively Bound With 9-Cis Retinoic Acid And Rosiglitazone And Co-Activator Peptides. [NCBI NR]
  • Chain D, The 2.1 Angstrom Resolution Crystal Structure Of The Heterodimer Of The Human Rxralpha And Ppargamma Ligand Binding Domains Respectively Bound With 9-Cis Retinoic Acid And Gi262570 And Co-Activator Peptides.gi|13399888|pdb|1FM6|X Chain X, The 2. [nrdb_11152004_Chlamydomonas]
  • Chain B, Ppargamma Ligand Binding Domain Complexed With A Farglitazar Analogue Gw4709 [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Chain A, Ppargamma Ligand Binding Domain Complexed With A Farglitazar Analogue Gw4709 [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Chain A, Structural And Biochemical Basis For Selective Repression Of The Orphan Nuclear Receptor Lrh-1 By Shp [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Chain D, The 2.1 Angstrom Resolution Crystal Structure Of The Heterodimer Of The Human Rxralpha And Ppargamma Ligand Binding Domains Respectively Bound With 9-Cis Retinoic Acid And Gi262570 And Co-Activator Peptides. [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Chain X, The 2.1 Angstrom Resolution Crystal Structure Of The Heterodimer Of The Human Rxralpha And Ppargamma Ligand Binding Domains Respectively Bound With 9-Cis Retinoic Acid And Rosiglitazone And Co-Activator Peptides. [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Chain D, The 2.1 Angstrom Resolution Crystal Structure Of The Heterodimer Of The Human Rxralpha And Ppargamma Ligand Binding Domains Respectively Bound With 9-Cis Retinoic Acid And Rosiglitazone And Co-Activator Peptides. [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
    • Organism: Homo sapiens
    Length: 272 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PESADLRALA KHLYDSYIKS FPLTKAKARA ILTGKTTDKS PFVIYDMNSL MMGEDKIKFK  60
   61 HITPLQEQSK EVAIRIFQGC QFRSVEAVQE ITEYAKSIPG FVNLDLNDQV TLLKYGVHEI 120
  121 IYTMLASLMN KDGVLISEGQ GFMTREFLKS LRKPFGDFME PKFEFAVKFN ALELDDSDLA 180
  181 IFIAVIILSG DRPGLLNVKP IEDIQDNLLQ ALELQLKLNH PESSQLFAKL LQKMTDLRQI 240
  241 VTEHVQLLQV IKKTETDMSL HPLLQEIYKD LY

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. gi|112491310 gi|13786858 gi|150261449 gi|197725196 gi|219109210, gi... gi|239782044, gi... gi|3659984 gi|56554577 gi|56966260, gi|... gi|6435671

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..272] PSI-BLAST 53.045757 Peroxisome proliferator activated receptor gamma, PPAR-gamma

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.15996699473685 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.46162010671465 bayes_pls_golite062009
  • protein binding
    		•  0.33427459029264 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.15459949087509 bayes_pls_golite062009
  • DNA binding
    		•  0.14395376162921 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle