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Protein Overview: gi|10120526, gi|...

General Information:
Name(s) found: gi|10120529 [NCBI NR]
gi|10120528 [NCBI NR]
gi|10120527 [NCBI NR]
gi|10120526 [NCBI NR]
Description(s) found:
Found 9 descriptions.
SHOW ALL
  • gi|10120529|pdb|1F2L|D Chain D, Crystal Structure Of Chemokine Domain Of Fractalkine [NCBI NR]
  • gi|10120528|pdb|1F2L|C Chain C, Crystal Structure Of Chemokine Domain Of Fractalkine [NCBI NR]
  • gi|10120527|pdb|1F2L|B Chain B, Crystal Structure Of Chemokine Domain Of Fractalkine [NCBI NR]
  • gi|10120526|pdb|1F2L|A Chain A, Crystal Structure Of Chemokine Domain Of Fractalkine [NCBI NR]
    • Organism: Homo sapiens
    Length: 76 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QHHGVTKCNI TCSKMTSKIP VALLIHYQQN QASCGKRAII LETRQHRLFC ADPKEQWVKD  60
   61 AMQHLDRQAA ALTRDG

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. gi|10120526, gi|... gi|112491310 gi|13786858 gi|150261449 gi|219109210, gi...

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..76] PSI-BLAST 15.154902 Chemokine domain of fractalkine

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.3900020421144 bayes_pls_golite062009
  • protein binding
    		•  1.08080878723934 bayes_pls_golite062009
  • receptor binding
    		•  0.76867241822245 bayes_pls_golite062009
  • cytokine activity
    		•  0.53309192942479 bayes_pls_golite062009
  • G-protein-coupled receptor binding
    		•  0.32020721127886 bayes_pls_golite062009
  • chemokine activity
    		•  0.26786878228995 bayes_pls_golite062009
  • chemokine receptor binding
    		•  0.26786878228995 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle