YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|10120526, gi\|...
Organism:	Homo sapiens
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10120526, gi|....

Description	E-value	Query Range	Subject Range
CCL3_RAT - C-C motif chemokine 3 OS=Rattus norvegicus GN=Ccl3 PE=1 SV=1	101.0	[0..2]	[69..25]
gi\|74139843 - gi\|74139843\|dbj\|BAE31765.1\| unnamed protein product [Mus musculus]	100.0	[0..2]	[69..7]
gi\|114156084, gi... - gi\|118096132\|ref\|XP_001231860.1\| PREDICTED: hypothetical protein LOC415651 [Gallus gallus], gi\|11617...	99.0	[0..1]	[71..24]
CCL4_CANLF - C-C motif chemokine 4 OS=Canis lupus familiaris GN=CCL4 PE=3 SV=1	98.0	[0..2]	[68..25]
gi\|164665382, gi... - gi\|57527998\|ref\|NP_001009579.1\| chemokine (C-C motif) ligand 3-like 1 [Sus scrofa], gi\|49354682\|gb\|A...	98.0	[0..2]	[69..25]
gi\|114667803 - gi\|114667803\|ref\|XP_001152451.1\| PREDICTED: similar to CCL3-like 1 [Pan troglodytes]	98.0	[0..2]	[66..130]
CCL4_MACMU - C-C motif chemokine 4 OS=Macaca mulatta GN=CCL4 PE=2 SV=1	98.0	[0..2]	[68..25]
CCL13 - chemokine (C-C motif) ligand 13 gi\|60654807, gi\|... - gi\|60654809\|gb\|AAX31969.1\| chemokine (C-C motif) ligand 13 [synthetic construct], gi\|60654807\|gb\|AAX...	97.0	[0..1]	[74..24]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QHHGVTKCNI TCSKMTSKIP VALLIHYQQN QASCGKRAII LETRQHRLFC ADPKEQWVKD  60
   61 AMQHLDRQAA ALTRDG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.154902
Match:	1b2tA
Description:	Chemokine domain of fractalkine
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.3900020421144	bayes_pls_golite062009
protein binding	1.08080878723934	bayes_pls_golite062009
receptor binding	0.76867241822245	bayes_pls_golite062009
cytokine activity	0.53309192942479	bayes_pls_golite062009
G-protein-coupled receptor binding	0.32020721127886	bayes_pls_golite062009
chemokine activity	0.26786878228995	bayes_pls_golite062009
chemokine receptor binding	0.26786878228995	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: