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Protein Overview: gi|3212317, gi|3...

General Information:
Name(s) found: gi|3212318 [NCBI NR]
gi|3212317 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|3212318|pdb|1A3Q|B Chain B, Human Nf-Kappa-B P52 Bound To Dna [NCBI NR]
  • gi|3212317|pdb|1A3Q|A Chain A, Human Nf-Kappa-B P52 Bound To Dna [NCBI NR]
    • Organism: Homo sapiens
    Length: 285 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPYLVIVEQP KQRGFRFRYG CEGPSHGGLP GASSEKGRKT YPTVKICNYE GPAKIEVDLV  60
   61 THSDPPRAHA HSLVGKQCSE LGICAVSVGP KDMTAQFNNL GVLHVTKKNM MGTMIQKLQR 120
  121 QRLRSRPQGL TEAEQRELEQ EAKELKKVMD LSIVRLRFSA FLRSLPLKPV ISQPIHDSKS 180
  181 PGASNLKISR MDKTAGSVRG GDEVYLLCDK VQKDDIEVRF YEDDENGWQA FGDFSPTDVH 240
  241 KQYAIVFRTP PYHKMKIERP VTVFLQLKRK RGGDVSDSKQ FTYYP

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. gi|112491310 gi|3212317, gi|3...

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..285] PSI-BLAST 118.0 p52 subunit of NF-kappa B (NFKB); p52 subunit of NF-kappa B (NFKB), N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.13591399970354 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.54158309583174 bayes_pls_golite062009
  • DNA binding
    		•  0.53363287856737 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.3602964037518 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle