| Protein: | rn-PE |
| Organism: | Drosophila melanogaster |
| Length: | 946 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rn-PE.
| Description | E-value | Query Range |
Subject Range |
|
|
971.0 | [0..116] | [945..392] |
|
Region A: Residues: [1-230] |
1 11 21 31 41 51
| | | | | |
1 MIMHGTWYKG PQLAHHPHSN PHNSSHGHSD YHQFRSYPSF VVTPYHDGHV QGPATPTPCT 60
61 APPTPCNGPV PVSVPVSIPV CHTGGQGSPV IVESSFAIAA AAAAAAAAVA VGGSSATPLL 120
121 PSPPIKIEQV FGEPSSLGAV VEDYALGLDC PVEHTFRKPH NNNGYSWSTG NNNEVVSHSS 180
181 NGHTNNHPTT PPTPPNEASA TQATSVSAIN LNQAQPASQT RSNFGSSIKS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [231-428] |
1 11 21 31 41 51
| | | | | |
1 PPSEPDAVTA ATCKSQENNS GQNPTPNSLS DHNPAHNLNS NSTAAAVAAA AAAAAAANMP 60
61 IGGVQGQNPT QGLVHWMSAV MAEHMTGQTH HDPGAVGMHY MWNGNVDHAK DISDYNLWPP 120
121 TPRSHQHASE HHPMSLKQEY EAKMNDHHHN NLQKGHFLDD NRLEHHAVTG QGGLGLGASN 180
181 GVGGGGGGAS VVGNSSLG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [429-469] |
1 11 21 31 41 51
| | | | | |
1 ASSHHAVAAA HHHNQAVAAA SAAALLVVPQ PINASKMGGP G
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [470-658] |
1 11 21 31 41 51
| | | | | |
1 GVSSVAGGHA TGGGSGRKYQ CKMCPQIFSS KADLQLHTQI HMREAKPYKC TQCSKAFANS 60
61 SYLSQHTRIH LGIKPYRCEI CQRKFTQLSH LQQHIRTHTG DKPYKCRHPG CQKAFSQLSN 120
121 LQSHSRCHQT DKPFKCNSCY KCFSDEPSLL EHIPKHKESK HLKTHICQYC GKSYTQETYL 180
181 TKHMQKHAE
|
| Detection Method: | |
| Confidence: | 58.045757 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [659-752] |
1 11 21 31 41 51
| | | | | |
1 RTDKRPPIVP GSAAAIAAAA AAAAGGSANP ANGPPPPPNP AQHQRNNLGL PPVSIAPSDN 60
61 GYWPKVSPDS AAAANAMEVM HQQQQQQQQQ QQQQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [753-824] |
1 11 21 31 41 51
| | | | | |
1 QQQQQQQQQQ AHHHHPQHGV PPQQHVPPQQ QQQQQQQQQH HHPQQQPPPQ HSMEAHYAQP 60
61 TAPNGSQSNG HG
|
| Detection Method: | |
| Confidence: | 8.522879 |
| Match: | 1x6hA |
| Description: | Solution structures of the C2H2 type zinc finger domain of human Transcriptional repressor CTCF |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 3.71642591026275 | bayes_pls_golite062009 |
| transcription regulator activity | 3.66965352784412 | bayes_pls_golite062009 |
| DNA binding | 3.60136746748155 | bayes_pls_golite062009 |
| transcription factor activity | 2.54048357633122 | bayes_pls_golite062009 |
| binding | 2.46754839887217 | bayes_pls_golite062009 |
| transcription repressor activity | 2.40376744272574 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.29326096340736 | bayes_pls_golite062009 |
| chromatin binding | 1.30140469366308 | bayes_pls_golite062009 |
| transcription activator activity | 1.29100548621048 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.73552256979331 | bayes_pls_golite062009 |
| transcription factor binding | 0.53246783159686 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.52093073106685 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.503526851907562 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [825-946] |
1 11 21 31 41 51
| | | | | |
1 AELQPHHRMP DPVREDIAST PSAVGPYDAA SITKTTSNSA FTPINSMPPH LNSLSHHPMA 60
61 QRPYLYDAIS FPNKNVNQNN ANAFPNQLIS LHQIRNYAHQ PAGLMAGEHL LGVSVGPGKD 120
121 KG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
