| Protein: | Ndg-PB |
| Organism: | Drosophila melanogaster |
| Length: | 1370 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ndg-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
863.0 | [0..1] | [1370..1] |
|
Region A: Residues: [1-146] |
1 11 21 31 41 51
| | | | | |
1 MPTFGSKLLA CLLLSSVILV SGQFEHYLDS LRASELYEFE DGSLGSIHLL PKGDSETIVL 60
61 QLEQPIHFYG EQYEQLYINT NGILTFNSEF PEYLNQPFPL EYASIAAFYS NVDTSFSDEG 120
121 TSISLFESKE QSILDRASSL VRYAFS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [147-268] |
1 11 21 31 41 51
| | | | | |
1 SQSEFEARQV IVATWRNVGY FDSKTDRLNT FQVALIANEQ STFVQFIYPD GGLNWLQGET 60
61 AGLGLPDIRA QAGFVAEDGR FYTLNGSGSE NARFLSESTN LGVPGVWLFE VAPIENEQNV 120
121 RS
|
| Detection Method: | |
| Confidence: | 18.537602 |
| Match: | PF06119.5 |
| Description: | No description for PF06119.5 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [269-544] |
1 11 21 31 41 51
| | | | | |
1 PDNAESLTES PALALSCQAH AHQCHEKAEC HDKAEGYCCV CGSGFYGNGK SCLANDQPIR 60
61 VTGTLTGELN KQPVSEEAKL QSYVVTSEGR TYTTINPLTP ELGAQLRLVL PLLTTVPWLF 120
121 AKSVGGVANG YQLTGGVYTH VSRLQFDSGE NLHVNQTFEG LNYWDQLSVK IEIYGEVPAV 180
181 AADAVLILPD YVEEYTFERP GELKSVQVLN INITEEQRVL GLQVEQRILY RSCLRDDEAD 240
241 PSATKVLQKI SKVALDYVER DQALRIGAMS KVGVTP
|
| Detection Method: | |
| Confidence: | 35.69897 |
| Match: | 1gl4A |
| Description: | Domain G2 of nidogen-1; EGF-like domain of nidogen-1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [545-681] |
1 11 21 31 41 51
| | | | | |
1 ESNACNDGTA DCVENSVCVP YEDTYRCDCY HGFAAQLDER GVEVCLDIDE CATGSHVCDE 60
61 NAVCDNTEGG FNCYCTEGFE GNGYRCLSNS TADNIEYPPA VEGQAEPTSE PSPNPSPYPD 120
121 QGQDQERERE DDQYPQP
|
| Detection Method: | |
| Confidence: | 10.0 |
| Match: | 1jv2B |
| Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [682-1370] |
1 11 21 31 41 51
| | | | | |
1 NPYPYPEEQI PQHPDECYRC SKDADCYQGR CTCHEGFDGD GYTCTNICGH GEVWENGRCE 60
61 PLLLERHDVD PLCDALGECR CPYGYELSED SQRCTYVQEF DGERNADLIP CDVDENCHIN 120
121 ATCNWYGQEL RHICTCQPGF RGDGYNCDPI SDDSCAIVSD YSPIYDIPMT ASLKPLQRPD 180
181 ICDVHADCVY EEHLGKSECQ CQAGYTGNGF NCQLAAECQS AEHCGENAFC DDGVCRCQAD 240
241 FERDVSDRCV PAGRCGSVFC GSNAICKWDS AEGVQYCDCL DGYQGDALTG CTSKPLSCHV 300
301 LNNCGIHATC EPTEDPANYE CQCIAGFKGD GYVCIEEQNC LNNPTLCDMN AQCRSTNSGL 360
361 VCVCNQGFFG NGSLCQERQH QDSDFLIVSQ GVMIARVPLN GRNVRPISVA QMAIGLDKDC 420
421 VEGRVYWGDI STKKIVSTKY DGTDLRPFIT TDIESPEGIA IDVISRRLYW ADSAKDTIEV 480
481 ASLDDPSLRA VIINKQLVNP RGIAVDPYRE KLFWSDWDRE SPKIEMSNLD GTGRELLLGK 540
541 DDVTLPNSLV VLENSGEVCY ADAGTKKVEC IEPQNRQIRT ISNELSYPFG ITFTHDQFYW 600
601 TDWTTKKVEI VDSLGARQTP IQPPFFGSHK MYGMTVVEQH CPQYQSPCQI SNGGCTDSRL 660
661 CLVNRQAPSG KSCKCTSAST GCTVLAPGY
|
| Detection Method: | |
| Confidence: | 114.0 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| lipoprotein binding | 2.85368924610519 | bayes_pls_golite062009 |
| low-density lipoprotein binding | 2.54260987806255 | bayes_pls_golite062009 |
| protein binding | 2.53596086569239 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 2.52206476012132 | bayes_pls_golite062009 |
| binding | 2.36338045524751 | bayes_pls_golite062009 |
| polysaccharide binding | 1.95292425479529 | bayes_pls_golite062009 |
| receptor activity | 1.78685457669149 | bayes_pls_golite062009 |
| pattern binding | 1.70736389292491 | bayes_pls_golite062009 |
| heparin binding | 1.62255185635992 | bayes_pls_golite062009 |
| extracellular matrix structural constituent | 1.60646803688398 | bayes_pls_golite062009 |
| receptor binding | 1.58134144073184 | bayes_pls_golite062009 |
| collagen binding | 1.3611207932336 | bayes_pls_golite062009 |
| transmembrane receptor activity | 1.3592722174781 | bayes_pls_golite062009 |
| carbohydrate binding | 1.17408158237797 | bayes_pls_golite062009 |
| lipoprotein receptor activity | 0.876048180035911 | bayes_pls_golite062009 |
| growth factor activity | 0.453414378307559 | bayes_pls_golite062009 |
| molecular transducer activity | 0.369745969135526 | bayes_pls_golite062009 |
| signal transducer activity | 0.369745969135526 | bayes_pls_golite062009 |
| extracellular matrix binding | 0.3265100728106 | bayes_pls_golite062009 |
| glycoprotein binding | 0.230499048015879 | bayes_pls_golite062009 |
| low-density lipoprotein receptor activity | 0.103819681297094 | bayes_pls_golite062009 |
