| Protein: | Rpn6-PA |
| Organism: | Drosophila melanogaster |
| Length: | 439 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rpn6-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
253.0 | [0..11] | [439..207] |
|
Region A: Residues: [1-219] |
1 11 21 31 41 51
| | | | | |
1 MTELLKENRS NEARRRKMAG ATLFERAQAL SSVNREEQDS SLLNKLVRDQ EGAENDEERI 60
61 RIKEQGILQQ GELYKQEGKA KELADLIKVT RPFLSSISKA KAAKLVRSLV DMFLDMDAGT 120
121 GIEVQLCKDC IEWAKQEKRT FLRQSLEARL IALYFDTALY TEALALGAQL LRELKKLDDK 180
181 NLLVEVQLLE SKTYHALSNL PKARAALTSA RTTANAIYC
|
| Detection Method: |  |
| Confidence: | 3.09691 |
| Match: | 2ifuA |
| Description: | No description for 2ifuA was found. |
|
Region A: Residues: [220-314] |
1 11 21 31 41 51
| | | | | |
1 PPKVQGALDL QSGILHAADE RDFKTAFSYF YEAFEGFDSV DSVKALTSLK YMLLCKIMLG 60
61 QSDDVNQLVS GKLAITYSGR DIDAMKSVAE ASHKR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.971 | 0.690 | cytosol | a.118.8 | TPR-like |
|
Region A: Residues: [315-439] |
1 11 21 31 41 51
| | | | | |
1 SLADFQAALK EYKKELAEDV IVQAHLGTLY DTMLEQNLCR IIEPYSRVQV AHVAESIQLP 60
61 MPQVEKKLSQ MILDKKFSGI LDQGEGVLIV FEETPVDKTY ERVLETIQSM GKVVDTLYQK 120
121 AKKLS
|
| Detection Method: | |
| Confidence: | 9.154902 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.50995556050336 | bayes_pls_golite062009 |
| nucleic acid binding | 3.38144578566524 | bayes_pls_golite062009 |
| binding | 3.33026160538031 | bayes_pls_golite062009 |
| DNA binding | 3.30822066787723 | bayes_pls_golite062009 |
| transcription factor activity | 2.60537570879007 | bayes_pls_golite062009 |
| hydrolase activity | 2.30467124306022 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.46680509390433 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.32971938164691 | bayes_pls_golite062009 |
| transcription activator activity | 1.08566311616647 | bayes_pls_golite062009 |
| transcription repressor activity | 0.95491822926452 | bayes_pls_golite062009 |
| protein binding | 0.653872239015235 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.42135864069093 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.136726704233672 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.118016217031359 | bayes_pls_golite062009 |
