| Protein: | gi|45446662, gi|... |
| Organism: | Drosophila melanogaster |
| Length: | 1031 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|45446662, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
704.0 | [0..1] | [1031..1] |
|
Region A: Residues: [1-171] |
1 11 21 31 41 51
| | | | | |
1 MAIESRSTST ASETTKTAIK STTSSKSPVT FGNLGEKRRA EQLFRCACAN FNLLLLTLML 60
61 GFGKCCTATP TPLNTPSTNT PTSAVSPHNP QTLDESGSLS KVIDGKAFIN MGFKFLNVSG 120
121 KIGTPLGIGQ SLEAKCDEKQ FQCHSGDCIP IRFVCDGDAD CKDHSDEQIK E
|
| Detection Method: |  |
| Confidence: | 3.52 |
| Match: | 2gtlO |
| Description: | No description for 2gtlO was found. |
|
Region A: Residues: [172-946] |
1 11 21 31 41 51
| | | | | |
1 CKFIEATCSS DQFRCGNGNC IPNKWRCDQE SDCADGSDEA NELCRARTCS PDEYACKSGE 60
61 GQCVPLAWMC DQSKDCSDGS DEHNCNQTCR ADEFTCGNGR CIQKRWKCDH DDDCGDGSDE 120
121 KECPVVPCDS VAEHTCTNGA CIAKRWVCDG DPDCSDGSDE RSCANVTKTT TPCLSHEYQC 180
181 KDRITCLHHS WLCDGDRDCP DGDDEHTANC KNVTCRADQF QCGDRSCIPG HLTCNGDKDC 240
241 ADGSDERDCG LSLSLGINQG GCNATSEFDC GGGQCVPLSK VCDKRKDCPD GEDEPAGKCG 300
301 INECASKNGG CMHQCIDLKV GHHCECHEGY KLSPDKRNCQ DINECEVPGK CSQICVNEIG 360
361 GFKCECEAGY MRDPKNHTRC KASEGHASLL LARRHDIRKI ALDHMEMTSI VNSTKAATAL 420
421 DFVFRTGMIF WSDVTTQSIY KAPIDEGNEK TVVLTKSSVT SDGLAVDWIY NHVYFTDTHK 480
481 CTIELTNFEG SMGKVLVKDS LDIPRSIALD PIEGWMYWSD WGASPRIERA GMDGSHRTTI 540
541 ISYDVKWPNG ITLDLVKKRI YWVDGKLNVI SSANYDGSQR SQVLYSGEYL RHPFSITTFE 600
601 DNVYWTDWDK QAVFKANKFT GEDVEPVTAM HMLQHPMVVH VYHPYRQPDG VNHCQSVNGH 660
661 CSHLCLPAPR INERSPRISC ACPTGLKLMV DGLMCVEDLT RPPRARKTKP RPKSPRRRLP 720
721 TGVQVGHADI RIEINDDLQL STRLPLLPTT FVADQRPVKN HTQIEKTTTP SEQPD
|
| Detection Method: | |
| Confidence: | 129.0 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| very-low-density lipoprotein receptor activity | 7.75680908341624 | bayes_pls_golite062009 |
| very-low-density lipoprotein binding | 7.75680908341624 | bayes_pls_golite062009 |
| low-density lipoprotein binding | 6.26591728596226 | bayes_pls_golite062009 |
| receptor activity | 5.18957329214193 | bayes_pls_golite062009 |
| transmembrane receptor activity | 5.12821337870369 | bayes_pls_golite062009 |
| molecular transducer activity | 4.28859337937742 | bayes_pls_golite062009 |
| signal transducer activity | 4.28859337937742 | bayes_pls_golite062009 |
| lipoprotein binding | 4.14588039269064 | bayes_pls_golite062009 |
| ErbB-2 class receptor binding | 4.1172010378646 | bayes_pls_golite062009 |
| low-density lipoprotein receptor activity | 3.65371958920557 | bayes_pls_golite062009 |
| lipoprotein receptor binding | 3.5371428063122 | bayes_pls_golite062009 |
| ErbB-3 class receptor binding | 3.52219710022937 | bayes_pls_golite062009 |
| lipoprotein receptor activity | 3.27342368855237 | bayes_pls_golite062009 |
| apolipoprotein binding | 3.15697162337516 | bayes_pls_golite062009 |
| binding | 3.10919144943954 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 2.86713236325679 | bayes_pls_golite062009 |
| heparin binding | 2.49012176521764 | bayes_pls_golite062009 |
| polysaccharide binding | 2.16901652361989 | bayes_pls_golite062009 |
| transcription regulator activity | 2.16844098063599 | bayes_pls_golite062009 |
| sterol transporter activity | 2.16184949636569 | bayes_pls_golite062009 |
| apolipoprotein E binding | 2.15688766106363 | bayes_pls_golite062009 |
| protein binding | 2.11668700345827 | bayes_pls_golite062009 |
| receptor binding | 2.00382722979859 | bayes_pls_golite062009 |
| lipid transporter activity | 1.91872326766441 | bayes_pls_golite062009 |
| lipoprotein transporter activity | 1.72944996169507 | bayes_pls_golite062009 |
| transcription factor binding | 1.71838409809333 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.61057978332614 | bayes_pls_golite062009 |
| high-density lipoprotein binding | 1.52515316728946 | bayes_pls_golite062009 |
| growth factor activity | 1.52153421000803 | bayes_pls_golite062009 |
| transporter activity | 1.44005597324471 | bayes_pls_golite062009 |
| collagen binding | 1.3611207932336 | bayes_pls_golite062009 |
| protein transporter activity | 1.27232657510644 | bayes_pls_golite062009 |
| pattern binding | 1.26957983931218 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.08803800589535 | bayes_pls_golite062009 |
| protein kinase activity | 1.00235965838736 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.741912411452008 | bayes_pls_golite062009 |
| carbohydrate binding | 0.72748768329894 | bayes_pls_golite062009 |
| kinase activity | 0.692244195382463 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.67022333774569 | bayes_pls_golite062009 |
| extracellular matrix structural constituent | 0.66981956037474 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 0.44857826904729 | bayes_pls_golite062009 |
| extracellular matrix binding | 0.3265100728106 | bayes_pls_golite062009 |
|
Region A: Residues: [947-1031] |
1 11 21 31 41 51
| | | | | |
1 SGFIALVVIA SLSGFAVLLS VLLLIGYRYC SKRRINSMNF ENPIYRKTTT TEDHFSLRKN 60
61 LPARIYDHTS VMDEEYSPVI GISSY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
