YRC Public Data Repository - Protein Structure Prediction

Protein:	YCJO_ECOLI
Organism:	Escherichia coli
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCJO_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|69287966, gi\|... - gi\|69287966\|ref\|ZP_00618123.1\| Binding-protein-dependent transport systems inner membrane component ...	223.0	[0..2]	[288..722]
gi\|67548364, gi\|... - gi\|67548364\|ref\|ZP_00426254.1\| Binding-protein-dependent transport systems inner membrane component ...	222.0	[0..31]	[292..536]
gi\|42522758, gi\|... - gi\|42522758\|ref\|NP_968138.1\| maltose/maltodextrin transport permease homologue [Bdellovibrio bacteri...	202.0	[0..8]	[293..444]
gi\|23100928, gi\|... - gi\|23100928\|ref\|NP_694395.1\| ABC transporter permease [Oceanobacillus iheyensis HTE831], gi\|22779163...	201.0	[0..41]	[288..181]
gi\|56420657, gi\|... - gi\|56420657\|ref\|YP_147975.1\| ABC transporter (permease) [Geobacillus kaustophilus HTA426], gi\|563804...	195.0	[0..50]	[289..181]
gi\|86285148, gi\|... - gi\|86361046\|ref\|YP_472933.1\| sugar ABC transporter, permease protein [Rhizobium etli CFN 42], gi\|862...	194.0	[0..1]	[288..65]
gi\|106890679, gi... - gi\|106890679\|ref\|ZP_01357872.1\| Binding-protein-dependent transport systems inner membrane component...	193.0	[0..2]	[285..65]
gi\|10173861, gi\|... - gi\|15613808\|ref\|NP_242111.1\| hypothetical protein BH1245 [Bacillus halodurans C-125], gi\|10173861\|db... gi\|25489748 - pir\|\|E83805 hypothetical protein BH1245 [imported] - Bacillus halodurans (strain C-125)	190.0	[0..50]	[288..192]
gi\|71158451, gi\|... - gi\|71365746\|ref\|ZP_00656296.1\| Binding-protein-dependent transport systems inner membrane component ...	188.0	[0..7]	[290..44]
gi\|8744950, gi\|2... - gi\|8744950\|emb\|CAB95276.1\| putative sugar transport integral membrane protein [Streptomyces coelicol...	187.0	[0..5]	[288..29]

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Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRLFSGRSD MPFALLLLAP SLLLLGGLVA WPMVSNIEIS FLRLPLNPNI ESTFVGVSNY  60
   61 VRILSDPGFW HSLWMTVWYT ALVVAGSTVL GLAVAMFFNR EFRLRKTARS LVILSYVTPS 120
  121 ISLVFAWKYM FNNGYGIVNY LGVDLLHLYE QAPLWFDNPG SSFVLVVLFA IWRYFPYAFI 180
  181 SFLAILQTID KSLYEAAEMD GANAWQRFRI VTLPAIMPVL ATVVTLRTIW MFYMFADVYL 240
  241 LTTKVDILGV YLYKTAFAFN DLGKAAAISV VLFIIIFAVI LLTRKRVNLN GNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
transporter activity	2.92901170384371	bayes_pls_golite062009
transmembrane transporter activity	2.82231503501622	bayes_pls_golite062009
active transmembrane transporter activity	2.62912035749387	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	2.58567076459772	bayes_pls_golite062009
primary active transmembrane transporter activity	2.58112472232827	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.57722913421807	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	2.57722913421807	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	2.57687258170314	bayes_pls_golite062009
ATPase activity, coupled	2.26533438516544	bayes_pls_golite062009
ATPase activity	2.12523930663356	bayes_pls_golite062009
substrate-specific transporter activity	2.08705004234574	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.06571106810861	bayes_pls_golite062009
pyrophosphatase activity	2.02843508794757	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.01869168199434	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.01800287925825	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.98824613202602	bayes_pls_golite062009
hydrolase activity	1.27489880499396	bayes_pls_golite062009
catalytic activity	0.79821499476005	bayes_pls_golite062009
ion transmembrane transporter activity	0.67039520089395	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.56369901852468	bayes_pls_golite062009
sugar transmembrane transporter activity	0.44915416750675	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: