YRC Public Data Repository - Protein Structure Prediction

Protein:	YBEY_ECOLI
Organism:	Escherichia coli
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBEY_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|37197841, gi\|... - gi\|37679099\|ref\|NP_933708.1\| putative metalloprotease [Vibrio vulnificus YJ016], gi\|37197841\|dbj\|BAC...	205.0	[0..4]	[155..99]
gi\|77979049 - gi\|77979049\|ref\|ZP_00834471.1\| COG0319: Predicted metal-dependent hydrolase [Yersinia intermedia ATC...	203.0	[0..1]	[155..1]
gi\|77957559 - gi\|77957559\|ref\|ZP_00821611.1\| COG0319: Predicted metal-dependent hydrolase [Yersinia bercovieri ATC...	201.0	[0..1]	[155..1]
YBEY_SALPK - Endoribonuclease YbeY OS=Salmonella paratyphi A (strain AKU_12601) GN=ybeY PE=3 SV=1 YBEY_SALPA - Endoribonuclease YbeY OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=ybeY PE=3 SV=1 RRMF_SALPA, YBEY... - Putative metalloprotease ybeY OS=Salmonella paratyphi A GN=ybeY PE=3 SV=1, Probable rRNA maturation ...	199.0	[0..1]	[154..1]
gi\|77962186 - gi\|77962186\|ref\|ZP_00826010.1\| COG0319: Predicted metal-dependent hydrolase [Yersinia mollaretii ATC...	199.0	[0..1]	[155..1]
gi\|77973047 - gi\|77973047\|ref\|ZP_00828600.1\| COG0319: Predicted metal-dependent hydrolase [Yersinia frederiksenii ...	199.0	[0..1]	[155..1]
gi\|197262278, gi... - gi\|197262278\|ref\|ZP_03162352.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YBEY_SALCH - Endoribonuclease YbeY OS=Salmonella choleraesuis (strain SC-B67) GN=ybeY PE=3 SV=1 gi\|200390340, gi... - gi\|200390340\|ref\|ZP_03216951.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|204930535, gi... - gi\|204930535\|ref\|ZP_03221465.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YBEY_SALPB - Endoribonuclease YbeY OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ybeY PE=3 SV=1 gi\|213425076 - gi\|213425076\|ref\|ZP_03357826.1\| putative metalloprotease [Salmonella enterica subsp. enterica serova... YBEY_SALHS - Endoribonuclease YbeY OS=Salmonella heidelberg (strain SL476) GN=ybeY PE=3 SV=1 gi\|194457149, gi... - gi\|194470785\|ref\|ZP_03076769.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YBEY_SALSV - Endoribonuclease YbeY OS=Salmonella schwarzengrund (strain CVM19633) GN=ybeY PE=3 SV=1 YBEY_SALA4 - Endoribonuclease YbeY OS=Salmonella agona (strain SL483) GN=ybeY PE=3 SV=1 gi\|168240518, gi... - gi\|205340341\|gb\|EDZ27105.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205347119, gi... - gi\|205347119\|gb\|EDZ33750.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205343173, gi... - gi\|205343173\|gb\|EDZ29937.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YBEY_SALNS - Endoribonuclease YbeY OS=Salmonella newport (strain SL254) GN=ybeY PE=3 SV=1 gi\|168231684, gi... - gi\|205334140\|gb\|EDZ20904.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168236656, gi... - gi\|197290423\|gb\|EDY29779.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YBEY_SALCH - Putative metalloprotease ybeY OS=Salmonella choleraesuis GN=ybeY PE=3 SV=1 gi\|213608001 - gi\|213608001\|ref\|ZP_03368827.1\| putative metalloprotease [Salmonella enterica subsp. enterica serova... gi\|213647867 - gi\|213647867\|ref\|ZP_03377920.1\| putative metalloprotease [Salmonella enterica subsp. enterica serova... gi\|214000744 - gi\|214000744\|ref\|ZP_03411479.1\| putative metalloprotease [Salmonella enterica subsp. enterica serova... YBEY_SALPC - Endoribonuclease YbeY OS=Salmonella paratyphi C (strain RKS4594) GN=ybeY PE=3 SV=1 gi\|29142607, gi\|... - gi\|29142607\|ref\|NP_805949.1\| putative metalloprotease [Salmonella enterica subsp. enterica serovar T... gi\|16759620 - gi\|16759620\|ref\|NP_455237.1\| putative metalloprotease [Salmonella enterica subsp. enterica serovar T... YBEY_SALTI - Putative metalloprotease ybeY OS=Salmonella typhi GN=ybeY PE=3 SV=1 YBEY_SALTI - Endoribonuclease YbeY OS=Salmonella typhi GN=ybeY PE=3 SV=1 gi\|238911618 - gi\|238911618\|ref\|ZP_04655455.1\| putative metalloprotease [Salmonella enterica subsp. enterica serova... YBEY_SALPB - Putative metalloprotease ybeY OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ybeY PE=3 S... RRMF_SALCH, YBEY... - Putative metalloprotease ybeY OS=Salmonella choleraesuis GN=ybeY PE=3 SV=1, Probable rRNA maturation...	199.0	[0..1]	[154..1]
YA45_PASMU, Y104... - (P57900) Hypothetical UPF0054 protein PM1045, Putative metalloprotease PM1045 OS=Pasteurella multoci... YBEY_PASMU - Endoribonuclease YbeY OS=Pasteurella multocida (strain Pm70) GN=ybeY PE=3 SV=1	199.0	[0..1]	[155..1]
YBEY_PECAS - Endoribonuclease YbeY OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ybeY PE=3 ... RRMF_ERWCT, Y131... - Putative metalloprotease ECA1317 OS=Erwinia carotovora subsp. atroseptica GN=ECA1317 PE=3 SV=1, Prob...	199.0	[0..1]	[155..1]
YD10_PHOLL, Y131... - (Q7N748) Hypothetical UPF0054 protein plu1310, Putative metalloprotease plu1310 OS=Photorhabdus lumi... YBEY_PHOLL - Endoribonuclease YbeY OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / ...	199.0	[0..1]	[155..1]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQVILDLQL ACEDNSGLPE ESQFQTWLNA VIPQFQEESE VTIRVVDTAE SHSLNLTYRG  60
   61 KDKPTNVLSF PFEVPPGMEM SLLGDLVICR QVVEKEAQEQ GKPLEAHWAH MVVHGSLHLL 120
  121 GYDHIEDDEA EEMEALETEI MLALGYEDPY IAEKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.39794
Match:	1xm5A
Description:	Crystal structure of hypothetical protein ybeY from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidase activity	1.82441002770327	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	1.636735406617	bayes_pls_golite062009
metallopeptidase activity	1.01800186871128	bayes_pls_golite062009
catalytic activity	0.891187593353827	bayes_pls_golite062009
endopeptidase activity	0.781297363942133	bayes_pls_golite062009
binding	0.492746574205109	bayes_pls_golite062009
metalloendopeptidase activity	0.282068540258585	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: