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View Structure Prediction Details

Protein: gi|151943690
Organism: Saccharomyces cerevisiae YJM789
Length: 767 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|151943690.

Description E-value Query
Range
Subject
Range
gi|151943690 - gi|151943690|gb|EDN62000.1| RNA helicase [Saccharomyces cerevisiae YJM789]
PRP43 - RNA helicase in the DEAH-box family, functions in both RNA polymerase I and polymerase II transcript...
PRP43_YEAST - Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae (strain ATCC 2...
0.0 [1..753] [1..753]
DEAH2_ARATH - Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 OS=Arabidopsis thaliana GN=At3g62...
0.0 [36..759] [4..726]
DHX15_SCHPO - Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe (str...
prp43 - ATP-dependent RNA helicase Prp43
0.0 [20..756] [3..735]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [3..754] [10..768]
gi|85080337 - gi|85080337|ref|XP_956523.1| probable ATP-binding protein PRP16 [MIPS] [Neurospora crassa OR74A]
gi|32415143, gi|... - gi|32415143|ref|XP_328051.1| probable ATP-binding protein PRP16 [MIPS] [Neurospora crassa], gi|28917...
0.0 [3..754] [10..768]
FBpp0307849, CG1... - This gene is referred to in FlyBase by the symbol Dmel\CG11107 (CG11107, FBgn0033160). It is a prote...
gi|220947046 - gi|220947046|gb|ACL86066.1| CG11107-PA [synthetic construct]
0.0 [68..748] [47..721]
gi|114593352 - gi|114593352|ref|XP_001164599.1| PREDICTED: similar to Putative pre-mRNA-splicing factor ATP-depende...
DHX15 - DEAH (Asp-Glu-Ala-His) box polypeptide 15
0.0 [3..743] [43..783]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKRRFSSE HPDPVETSIP EQAAEIAEEL SKQHPLPSEE PLVHHDAGEF KGLQRHHTSA  60
   61 EEAQKLEDGK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [71-273]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INPFTGREFT PKYVDILKIR RELPVHAQRD EFLKLYQNNQ IMVFVGETGS GKTTQIPQFV  60
   61 LFDEMPHLEN TQVACTQPRR VAAMSVAQRV AEEMDVKLGE EVGYSIRFEN KTSNKTILKY 120
  121 MTDGMLLREA MEDHDLSRYS CIILDEAHER TLATDILMGL LKQVVKRRPD LKIIIMSATL 180
  181 DAEKFQRYFN DAPLLAVPGR TYP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.69897
Match: 1hv8A_
Description: Putative DEAD box RNA helicase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [274-453]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VELYYTPEFQ RDYLDSAIRT VLQIHATEEA GDILLFLTGE DEIEDAVRKI SLEGDQLVRE  60
   61 EGCGPLSVYP LYGSLPPHQQ QRIFEPAPES HNGRPGRKVV ISTNIAETSL TIDGIVYVVD 120
  121 PGFSKQKVYN PRIRVESLLV SPISKASAQQ RAGRAGRTRP GKCFRLYTEE AFQKELIEQS 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.69897
Match: 1hv8A_
Description: Putative DEAD box RNA helicase
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [454-523]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPEILRSNLS STVLELKKLG IDDLVHFDFM DPPAPETMMR ALEELNYLAC LDDEGNLTPL  60
   61 GRLASQFPLD 

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.23
Match: 1jr3D
Description: delta subunit; delta subunit of DNA polymerase III, N-domain
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [524-666]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PMLAVMLIGS FEFQCSQEIL TIVAMLSVPN VFIRPTKDKK RADDAKNIFA HPDGDHITLL  60
   61 NVYHAFKSDE AYEYGIHKWC RDHYLNYRSL SAADNIRSQL ERLMNRYNLE LNTTDYESPK 120
  121 YFDNIRKALA SGFFMQVAKK RSG

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.23
Match: 1jr3D
Description: delta subunit; delta subunit of DNA polymerase III, N-domain
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [667-767]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKGYITVKDN QDVLIHPSTV LGHDAEWVIY NEFVLTSKNY IRTVTSVRPE WLIEIAPAYY  60
   61 DLSNFQKGDV KLSLERIKEK VDRLNELKQG KNKKKSKHSK K

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle