YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|145209101, gi...
Organism:	Yersinia pestis Pestoides F
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|145209101, gi....

Description	E-value	Query Range	Subject Range
gi\|12722019, gi\|... - gi\|15603484\|ref\|NP_246558.1\| ribulose-phosphate 3-epimerase [Pasteurella multocida subsp. multocida ...	1.0E-58	[1..222]	[16..237]
gi\|59712895, gi\|... - gi\|59712895\|ref\|YP_205671.1\| ribulose-phosphate 3-epimerase [Vibrio fischeri ES114], gi\|59480996\|gb\|...	2.0E-58	[1..223]	[1..223]
gi\|84376617, gi\|... - gi\|84390814\|ref\|ZP_00991506.1\| ribulose-phosphate 3-epimerase [Vibrio splendidus 12B01], gi\|84376617...	6.0E-58	[1..222]	[1..222]
gi\|86147333, gi\|... - gi\|86147333\|ref\|ZP_01065647.1\| ribulose-phosphate 3-epimerase [Vibrio sp. MED222], gi\|85834898\|gb\|EA...	7.0E-58	[1..222]	[1..222]
gi\|22127808, gi\|... - gi\|22127808\|ref\|NP_671231.1\| ribulose-phosphate 3-epimerase [Yersinia pestis KIM], gi\|21960939\|gb\|AA... gi\|167419005, gi... - gi\|167419005\|ref\|ZP_02310758.1\| ribulose-phosphate 3-epimerase [Yersinia pestis biovar Orientalis st... gi\|45434874, gi\|... - gi\|45440019\|ref\|NP_991558.1\| ribulose-phosphate 3-epimerase [Yersinia pestis biovar Microtus str. 91... gi\|165936169, gi... - gi\|165936169\|ref\|ZP_02224738.1\| ribulose-phosphate 3-epimerase [Yersinia pestis biovar Orientalis st... gi\|167399079, gi... - gi\|167399079\|ref\|ZP_02304603.1\| ribulose-phosphate 3-epimerase [Yersinia pestis biovar Antiqua str. ... gi\|165928023, gi... - gi\|165928023\|ref\|ZP_02223855.1\| ribulose-phosphate 3-epimerase [Yersinia pestis biovar Orientalis st...	1.0E-57	[1..225]	[5..229]
gi\|170718563, gi... - gi\|53728308\|ref\|ZP_00348123.1\| COG0036: Pentose-5-phosphate-3-epimerase [Haemophilus somnus 2336], g... gi\|23467805, gi\|... - gi\|23467805\|ref\|ZP_00123383.1\| COG0036: Pentose-5-phosphate-3-epimerase [Haemophilus somnus 129PT], ...	1.0E-57	[1..224]	[1..224]
gi\|153223460, gi... - gi\|153223460\|ref\|ZP_01953883.1\| ribulose-phosphate 3-epimerase [Vibrio cholerae MAK 757], gi\|1241181... gi\|121547642, gi... - gi\|121588099\|ref\|ZP_01677847.1\| ribulose-phosphate 3-epimerase [Vibrio cholerae 2740-80], gi\|1215476... gi\|183179608, gi... - gi\|183179608\|ref\|ZP_02957819.1\| ribulose-phosphate 3-epimerase [Vibrio cholerae MZO-3], gi\|183013019... gi\|125620693, gi... - gi\|254226800\|ref\|ZP_04920373.1\| ribulose-phosphate 3-epimerase [Vibrio cholerae V51], gi\|225354553\|r... gi\|125619178, gi... - gi\|254851164\|ref\|ZP_05240514.1\| ribulose-phosphate 3-epimerase [Vibrio cholerae MO10], gi\|254846869\|... gi\|126520939, gi... - gi\|153821554\|ref\|ZP_01974221.1\| ribulose-phosphate 3-epimerase [Vibrio cholerae B33], gi\|126520939\|g... gi\|153819037, gi... - gi\|153819037\|ref\|ZP_01971704.1\| ribulose-phosphate 3-epimerase [Vibrio cholerae NCTC 8457], gi\|12651... gi\|254285819, gi... - gi\|254285819\|ref\|ZP_04960781.1\| ribulose-phosphate 3-epimerase [Vibrio cholerae AM-19226], gi\|197752... gi\|254222319, gi... - gi\|254222319\|ref\|ZP_04916191.1\| ribulose-phosphate 3-epimerase [Vibrio cholerae RC385], gi\|194536466... gi\|148874448, gi... - gi\|153830049\|ref\|ZP_01982716.1\| ribulose-phosphate 3-epimerase [Vibrio cholerae 623-39], gi\|14887444... gi\|149741243, gi... - gi\|153825097\|ref\|ZP_01977764.1\| ribulose-phosphate 3-epimerase [Vibrio cholerae MZO-2], gi\|149741243... gi\|9657215, gi\|1... - gi\|9657215\|gb\|AAF95766.1\| ribulose-phosphate 3-epimerase [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11270182 - pir\|\|G82052 ribulose-phosphate 3-epimerase VC2625 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|227010629, gi... - gi\|227082741\|ref\|YP_002811292.1\| ribulose-phosphate 3-epimerase [Vibrio cholerae M66-2], gi\|22701062...	2.0E-57	[1..223]	[13..235]
gi\|68249166, gi\|... - gi\|68249166\|ref\|YP_248278.1\| ribulose-phosphate 3-epimerase [Haemophilus influenzae 86-028NP], gi\|68...	2.0E-57	[1..223]	[11..233]
gi\|78702071, gi\|... - gi\|78702071\|ref\|ZP_00866514.1\| Ribulose-phosphate 3-epimerase [Alkalilimnicola ehrlichei MLHE-1], gi...	5.0E-57	[1..224]	[1..224]
gi\|50123009, gi\|... - gi\|50123009\|ref\|YP_052176.1\| ribulose-phosphate 3-epimerase [Pectobacterium atrosepticum SCRI1043], ...	6.0E-57	[1..225]	[1..225]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKYLIAPSI LSADFARLGE DTAKVLAAGA DIVHFDVMDN HYVPNLTIGP MVCKALRDYG  60
   61 ITAPIDVHLM VKPVDRIVPD FAKAGATYIT FHPEASEHVD RTLQLIKESG CKAGLVFNPA 120
  121 TPLSYLDYVM DKLDVILLMS VNPGFGGQSF IPETLNKLRQ VRKLIDDSGY DIRLEVDGGV 180
  181 KVENIRQIAA AGADMFVAGS AIFNQPDYAA VIDAMRNELA MAANG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.522879
Match:	1tqjA
Description:	Crystal structure of D-ribulose 5-phosphate 3-epimerase from Synechocystis to 1.6 angstrom resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribulose-phosphate 3-epimerase activity	3.28372503209224	bayes_pls_golite062009
catalytic activity	2.44231061702877	bayes_pls_golite062009
intramolecular oxidoreductase activity	1.86158562896415	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	1.36492964250879	bayes_pls_golite062009
isomerase activity	0.935800409577999	bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives	0.764608070506109	bayes_pls_golite062009
orotidine-5'-phosphate decarboxylase activity	0.758594564254247	bayes_pls_golite062009
binding	0.595171555788202	bayes_pls_golite062009
racemase and epimerase activity	0.288948763149344	bayes_pls_golite062009
carboxy-lyase activity	0.1100847613283	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: