YRC Public Data Repository - Protein Structure Prediction

Protein:	BCN92_DROSU
Organism:	Drosophila subobscura
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BCN92_DROSU.

Description	E-value	Query Range	Subject Range
gi\|39943160, gi\|... - gi\|39943160\|ref\|XP_361117.1\| hypothetical protein MG03660.4 [Magnaporthe grisea 70-15], gb\|EAA52065....	129.0	[0..4]	[92..12]
gi\|40741617, gi\|... - gi\|67537190\|ref\|XP_662369.1\| hypothetical protein AN4765.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	125.0	[0..3]	[91..10]
gi\|50734067 - gi\|50734067\|ref\|XP_418962.1\| PREDICTED: similar to chromosome 6 open reading frame 149; CGI-203 prot...	117.0	[0..2]	[83..126]
gi\|125980855, gi... - gi\|54642756\|gb\|EAL31501.1\| GA17638 [Drosophila pseudoobscura pseudoobscura], gi\|125980855\|ref\|XP_001... gi\|54642756\|gb\|E... - GA17638-PA [Drosophila pseudoobscura], GA17638 [Drosophila pseudoobscura pseudoobscura]	107.0	[0..1]	[92..1]
gi\|220952160 - gi\|220952160\|gb\|ACL88623.1\| bcn92-PA [synthetic construct] bcn92-PA - The gene bcn92 is referred to in FlyBase by the symbol Dmel\bcn92 (CG3717, FBgn0013432). It is a pro...	106.0	[0..1]	[92..1]
LYRM4 - LYR motif containing 4	101.0	[0..2]	[84..4]
gi\|16306961 - gi\|16306961\|gb\|AAH09552.1\| LYR motif containing 4 [Homo sapiens] gi\|190689721, gi... - gi\|190691085\|gb\|ACE87317.1\| LYR motif containing 4 protein [synthetic construct], gi\|190689721\|gb\|AC... gi\|55625814 - gi\|55625814\|ref\|XP_518217.1\| PREDICTED: hypothetical protein LOC57128 isoform 2 [Pan troglodytes]	100.0	[0..2]	[84..4]
gi\|49643282, gi\|... - gi\|50308291\|ref\|XP_454147.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643282\|emb\|CAG9923... gi\|49643282 - gi\|49643282\|emb\|CAG99234.1\| KLLA0E04467p [Kluyveromyces lactis]	100.0	[0..2]	[85..6]
LYRM4_BOVIN - LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1	100.0	[0..2]	[85..4]
gi\|71000545, gi\|... - gi\|71000545\|ref\|XP_754956.1\| Complex 1 protein (LYR family) family [Aspergillus fumigatus Af293], gi...	100.0	[0..3]	[91..10]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTRRQAITL YRNLLRESEK LPAYNFRMYA VRKIRDAFRA NKAIRDFAEI DRQMEAGKQN  60
   61 LELIRRQVII GHLYTADKLV IENKKTLSPL DD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.920819
Match:	PF05347.6
Description:	No description for PF05347.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.963	0.874	cellular_component	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.949	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.946	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.938	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.930	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain

Predicted functions:

Term	Confidence	Notes
binding	2.750337256461	bayes_pls_golite062009
transcription regulator activity	2.45167981703326	bayes_pls_golite062009
DNA binding	2.1571569336348	bayes_pls_golite062009
nucleic acid binding	1.99111688330156	bayes_pls_golite062009
transcription factor activity	1.59428115821072	bayes_pls_golite062009
protein binding	0.691169139667605	bayes_pls_golite062009
sequence-specific DNA binding	0.361745331560016	bayes_pls_golite062009
transcription activator activity	0.226181041007298	bayes_pls_golite062009
transcription repressor activity	0.0878557483844589	bayes_pls_golite062009
transcription factor binding	0.0275047188903694	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: