YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP5J_BOVIN
Organism:	Bos taurus
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP5J_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|114683721 - gi\|114683721\|ref\|XP_001158570.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex,...	200.0	[0..1]	[108..9]
gi\|51479141 - gi\|51479141\|ref\|NP_001003701.1\| ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 ...	198.0	[0..1]	[108..9]
gi\|57108752 - gi\|57108752\|ref\|XP_535569.1\| PREDICTED: similar to ATP synthase coupling factor 6, mitochondrial pre...	194.0	[0..1]	[108..1]
gi\|61372423, gi\|... - gi\|61372423\|gb\|AAX43841.1\| ATP synthase H+ transporting mitochondrial F0 complex subunit F6 [synthet...	193.0	[0..1]	[108..1]
gi\|58568848 - gi\|58568848\|gb\|AAW79005.1\| GekBS159P [Gekko japonicus]	191.0	[0..1]	[108..1]
ATP5J_MOUSE - ATP synthase-coupling factor 6, mitochondrial OS=Mus musculus GN=Atp5j PE=1 SV=1	190.0	[0..1]	[108..1]

Back

Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILQRLFRLS SAVQSAISVS WRRNIGITAV AFNKELDPVQ KLFVDKIREY RTKRQTSGGP  60
   61 VDAGPEYQQD LDRELFKLKQ MYGKADMNTF PNFTFEDPKF EVVEKPQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.30103
Match:	2clyC
Description:	No description for 2clyC was found.

Predicted functions:

Term	Confidence	Notes
hydrogen ion transmembrane transporter activity	9.75824095339252	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	8.02996687028513	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	7.03421298777104	bayes_pls_golite062009
hydrogen-exporting ATPase activity, phosphorylative mechanism	6.33533983608004	bayes_pls_golite062009
cation transmembrane transporter activity	3.43905785379115	bayes_pls_golite062009
ion transmembrane transporter activity	3.40493178308083	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.11087315592201	bayes_pls_golite062009
transporter activity	2.33132024466294	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.14184902122852	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.91129736413093	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.68240669590269	bayes_pls_golite062009
pyrophosphatase activity	1.61544861060476	bayes_pls_golite062009
ATPase activity	1.60552572277149	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.5982352071671	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.5958855657846	bayes_pls_golite062009
transmembrane transporter activity	1.51271412556287	bayes_pls_golite062009
substrate-specific transporter activity	1.35431931487507	bayes_pls_golite062009
primary active transmembrane transporter activity	0.907643434530535	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.90151467619641	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.873541340643087	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.870099443464063	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.870012300409237	bayes_pls_golite062009
active transmembrane transporter activity	0.869408183980935	bayes_pls_golite062009
catalytic activity	0.67288476528593	bayes_pls_golite062009
hydrolase activity	0.636687378087875	bayes_pls_golite062009
ATPase activity, coupled	0.423824294580682	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: