| Protein: | him-8 |
| Organism: | Caenorhabditis elegans |
| Length: | 361 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for him-8.
| Description | E-value | Query Range |
Subject Range |
|
|
417.0 | [0..44] | [360..2515] |
|
Region A: Residues: [1-72] |
1 11 21 31 41 51
| | | | | |
1 MNGNSLNSFV NIRIYGKTLE NLKHYGLIEY LNEFAGGSSF VSLTESTSIS SINTATVDTP 60
61 RFSTPIVPNV GL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [73-279] |
1 11 21 31 41 51
| | | | | |
1 YQKFTLNLSE KISEIGPNDE NEDLKESYDQ EPEEELNSSH ESNNSVEKVM DMIIEDVVSN 60
61 HTTNIADGDD INSPIVSSGQ SEFLQDGVDN DGNIDDYEEY QSLPPNDDVI MNETELMDVD 120
121 RTTVMTPLRS PTFFDYHNES GDEDQLNENE MKSPDSKNDE INKDEIHNIQ CHFPNCNRAI 180
181 AWKRKYGKLR LIDHALVHCD KNFLKCK
|
| Detection Method: | |
| Confidence: | 46.154902 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [280-361] |
1 11 21 31 41 51
| | | | | |
1 KCKHTCHTIR QMRYHYRIFH STSKMEGFGV SGLPTKNKGF QKIMNACFAD QLVEMNKRKN 60
61 PPKSQNGSRR SRVKSKSKRS GI
|
| Detection Method: | |
| Confidence: | 16.154902 |
| Match: | 2gliA |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.33104470146352 | bayes_pls_golite062009 |
| DNA binding | 0.750106478442632 | bayes_pls_golite062009 |
| nucleic acid binding | 0.393163105327437 | bayes_pls_golite062009 |
| protein binding | 0.309302474986083 | bayes_pls_golite062009 |
| transcription regulator activity | 0.130445238810851 | bayes_pls_golite062009 |
| transcription factor activity | 9.32354595580165E-4 | bayes_pls_golite062009 |
