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View Structure Prediction Details

Protein: BAME1_ARATH
Organism: Arabidopsis thaliana
Length: 1003 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BAME1_ARATH.

Description E-value Query
Range		 Subject
Range
BAME2_ARATH - Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BA...
 668.0 [0..12] [1002..14]

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Predicted Domain #1
Region A:
Residues: [1-327] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLFLLLLFL LHISHTFTAS RPISEFRALL SLKTSLTGAG DDKNSPLSSW KVSTSFCTWI  60
   61 GVTCDVSRRH VTSLDLSGLN LSGTLSPDVS HLRLLQNLSL AENLISGPIP PEISSLSGLR 120
  121 HLNLSNNVFN GSFPDEISSG LVNLRVLDVY NNNLTGDLPV SVTNLTQLRH LHLGGNYFAG 180
  181 KIPPSYGSWP VIEYLAVSGN ELVGKIPPEI GNLTTLRELY IGYYNAFEDG LPPEIGNLSE 240
  241 LVRFDGANCG LTGEIPPEIG KLQKLDTLFL QVNVFSGPLT WELGTLSSLK SMDLSNNMFT 300
  301 GEIPASFAEL KNLTLLNLFR NKLHGEI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.221849
Match: 1ogqA
Description: Polygalacturonase inhibiting protein PGIP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
receptor activity 3.83269261081332 bayes_pls_golite062009
transmembrane receptor activity 3.75945815830294 bayes_pls_golite062009
G-protein coupled receptor activity 3.09281229196379 bayes_pls_golite062009
molecular transducer activity 2.99319600166105 bayes_pls_golite062009
signal transducer activity 2.99319600166105 bayes_pls_golite062009
binding 1.87302803330255 bayes_pls_golite062009
receptor binding 1.66628371061052 bayes_pls_golite062009
transmembrane receptor protein kinase activity 1.50579173120225 bayes_pls_golite062009
glycosaminoglycan binding 1.47047886487324 bayes_pls_golite062009
protein kinase activity 1.43632437878638 bayes_pls_golite062009
collagen binding 1.31548082127061 bayes_pls_golite062009
nucleic acid binding 1.31434688144553 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 1.16530645523007 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.12585418084562 bayes_pls_golite062009
kinase activity 1.11577341189523 bayes_pls_golite062009
transmembrane receptor protein tyrosine kinase activity 0.925064573334258 bayes_pls_golite062009
protein binding 0.646159692466759 bayes_pls_golite062009
protein-hormone receptor activity 0.42902267001067 bayes_pls_golite062009
extracellular matrix binding 0.347753255340891 bayes_pls_golite062009
heparin binding 0.342156171222462 bayes_pls_golite062009
polysaccharide binding 0.34063289254939 bayes_pls_golite062009
pattern binding 0.339536765321749 bayes_pls_golite062009
protein tyrosine kinase activity 0.231213253402712 bayes_pls_golite062009
enzyme regulator activity 0.154501444195573 bayes_pls_golite062009
growth factor binding 0.0358215683345522 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [328-372] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEFIGDLPEL EVLQLWENNF TGSIPQKLGE NGKLNLVDLS SNKLT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.0
Match: 1p8tA
Description: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [373-670] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTLPPNMCSG NKLETLITLG NFLFGSIPDS LGKCESLTRI RMGENFLNGS IPKGLFGLPK  60
   61 LTQVELQDNY LSGELPVAGG VSVNLGQISL SNNQLSGPLP PAIGNFTGVQ KLLLDGNKFQ 120
  121 GPIPSEVGKL QQLSKIDFSH NLFSGRIAPE ISRCKLLTFV DLSRNELSGE IPNEITAMKI 180
  181 LNYLNLSRNH LVGSIPGSIS SMQSLTSLDF SYNNLSGLVP GTGQFSYFNY TSFLGNPDLC 240
  241 GPYLGPCKDG VAKGGHQSHS KGPLSASMKL LLVLGLLVCS IAFAVVAIIK ARSLKKAS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 6.61
Match: 1ogqA
Description: Polygalacturonase inhibiting protein PGIP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
receptor activity 3.63203017549127 bayes_pls_golite062009
transmembrane receptor activity 3.56258215414028 bayes_pls_golite062009
G-protein coupled receptor activity 2.86089370110523 bayes_pls_golite062009
molecular transducer activity 2.85996487503213 bayes_pls_golite062009
signal transducer activity 2.85996487503213 bayes_pls_golite062009
binding 1.88645638630371 bayes_pls_golite062009
receptor binding 1.62537779185792 bayes_pls_golite062009
protein kinase activity 1.44543786404772 bayes_pls_golite062009
transmembrane receptor protein kinase activity 1.39264933048518 bayes_pls_golite062009
nucleic acid binding 1.33922283636437 bayes_pls_golite062009
glycosaminoglycan binding 1.31428931575251 bayes_pls_golite062009
collagen binding 1.2024797718455 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 1.18001333603647 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.14774707593524 bayes_pls_golite062009
kinase activity 1.13356668527648 bayes_pls_golite062009
transmembrane receptor protein tyrosine kinase activity 0.831155397246448 bayes_pls_golite062009
protein binding 0.629660151009639 bayes_pls_golite062009
heparin binding 0.277971593709408 bayes_pls_golite062009
pattern binding 0.218511437528696 bayes_pls_golite062009
polysaccharide binding 0.201838575206714 bayes_pls_golite062009
protein tyrosine kinase activity 0.176363297428464 bayes_pls_golite062009
enzyme regulator activity 0.143284785584541 bayes_pls_golite062009
extracellular matrix binding 0.137428338289148 bayes_pls_golite062009
protein-hormone receptor activity 0.0124918555036033 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [671-1003] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESRAWRLTAF QRLDFTCDDV LDSLKEDNII GKGGAGIVYK GVMPNGDLVA VKRLAAMSRG  60
   61 SSHDHGFNAE IQTLGRIRHR HIVRLLGFCS NHETNLLVYE YMPNGSLGEV LHGKKGGHLH 120
  121 WDTRYKIALE AAKGLCYLHH DCSPLIVHRD VKSNNILLDS NFEAHVADFG LAKFLQDSGT 180
  181 SECMSAIAGS YGYIAPEYAY TLKVDEKSDV YSFGVVLLEL VTGRKPVGEF GDGVDIVQWV 240
  241 RKMTDSNKDS VLKVLDPRLS SIPIHEVTHV FYVAMLCVEE QAVERPTMRE VVQILTEIPK 300
  301 LPPSKDQPMT ESAPESELSP KSGVQSPPDL LNL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.0
Match: 2qkwB
Description: No description for 2qkwB was found.
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