| Protein: | gi|11357754, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 406 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11357754, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
328.0 | [0..1] | [406..1] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MELKLATAEK QVLDELVKLL QSRDLRGENG NWKEFLHVYD KNADSPSDPS RRSHEDLVQF 60
61 LTTFKKKEDL QLLKCHANHL LIENLKQESQ DEDTPEQMLV RLTVEHPSYS LDYSFKPYSE 120
121 DWFVSDVGMK MKKVM
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [136-303] |
1 11 21 31 41 51
| | | | | |
1 ESTNMVAVDC EMVLCEDGTE GLVRVGVVDR DLKVILDEFV KPNKPVVDYR TDITGITAED 60
61 IENASLSVVD IQETLQPFLS TGTILVGHSL NRDLEVLKID HPKVIDTALV FKYPNTRKLR 120
121 RPSLNNLCKS ILGYEVRKTG VPHDCVHDAS AAMKLALAVV EKRVDTTI
|
| Detection Method: | |
| Confidence: | 30.522879 |
| Match: | 1wljA |
| Description: | human ISG20 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ribonuclease activity | 5.30591758406946 | bayes_pls_golite062009 |
| exoribonuclease activity | 3.71639182685131 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 3.59362615133405 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 3.1992647486402 | bayes_pls_golite062009 |
| exonuclease activity | 3.13676176369406 | bayes_pls_golite062009 |
| nuclease activity | 3.11657409772275 | bayes_pls_golite062009 |
| ribonuclease H activity | 2.91966688044755 | bayes_pls_golite062009 |
| single-stranded DNA specific 3'-5' exodeoxyribonuclease activity | 2.75003136922541 | bayes_pls_golite062009 |
| endonuclease activity | 2.63074055051349 | bayes_pls_golite062009 |
| endoribonuclease activity | 2.59247838057313 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 2.57498413015114 | bayes_pls_golite062009 |
| hydrolase activity | 2.41899414621161 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 2.04408785855894 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 1.44123900197846 | bayes_pls_golite062009 |
| catalytic activity | 1.25233849524628 | bayes_pls_golite062009 |
| nucleic acid binding | 1.23371034593624 | bayes_pls_golite062009 |
| protein binding | 1.16870279238939 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 1.1219517187744 | bayes_pls_golite062009 |
| transcription regulator activity | 1.10433412699603 | bayes_pls_golite062009 |
| DNA binding | 0.860359347662869 | bayes_pls_golite062009 |
| binding | 0.762139256580538 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.717600245625866 | bayes_pls_golite062009 |
| endoribonuclease activity, producing 5'-phosphomonoesters | 0.708753843279937 | bayes_pls_golite062009 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.598360955770972 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.568273228950698 | bayes_pls_golite062009 |
| 0.49473250705373 | bayes_pls_golite062009 | |
| transcription factor activity | 0.332903382446869 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity | 0.278838342302102 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity, producing 5'-phosphomonoesters | 0.261428436029202 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.0701825322473915 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.00214157813118243 | bayes_pls_golite062009 |
|
Region A: Residues: [304-406] |
1 11 21 31 41 51
| | | | | |
1 KPSKEVEKAK LFLHKIPNNV PSEELEQVLS GKFTLDVKQA KTQGRYYCAF ALFHSSEDAD 60
61 QAFEHIDGIE MTDSLGLPQK VVIIKLSSGS RASIYVRKMV QDE
|
| Detection Method: | |
| Confidence: | 1.39 |
| Match: | 2cqpA |
| Description: | Solution structure of the RNA binding domain of RNA-binding protein 12 |
Matching Structure (courtesy of the PDB): |
|
