YRC Public Data Repository - Protein Structure Prediction

Protein:	Y5780_ARATH
Organism:	Arabidopsis thaliana
Length:	559 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y5780_ARATH.

Description	E-value	Query Range	Subject Range
gi\|218193389 - gi\|218193389\|gb\|EEC75816.1\| hypothetical protein OsI_12774 [Oryza sativa Indica Group] gi\|108710040 - gi\|108710040\|gb\|ABF97835.1\| transposon protein, putative, Mutator sub-class, expressed [Oryza sativa...	521.0	[0..2]	[545..3]
gi\|241941352, gi... - gi\|242080467\|ref\|XP_002445002.1\| hypothetical protein SORBIDRAFT_07g002590 [Sorghum bicolor], gi\|241...	516.0	[0..1]	[557..1]
Y1044_ARATH - BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2	498.0	[0..1]	[557..1]
gi\|102139797 - gi\|102139797\|gb\|ABF69982.1\| nonphototropic hypocotyl 3 (NPH3) family protein [Musa acuminata]	496.0	[0..20]	[557..65]
gi\|92896715 - gi\|92896715\|gb\|ABE93313.1\| BTB/POZ; NPH3 [Medicago truncatula]	484.0	[0..1]	[558..1]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFMKIGTKP DTFYTQEASR ILITDTPNDL VIRINNTTYH LHRSCLVPKC GLLRRLCTDL  60
   61 EESDTVTIEL NDIPGGADAF ELCAKFCYDI TINLSAHNLV NALCASKFLR MSDSVDKGNL 120
  121 LPKLEAFFHS CILQGWKDSI VTLQSTTKLP EWCENL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	2nn2A
Description:	No description for 2nn2A was found.

Predicted Domain #2

Region A:
Residues: [157-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIVRKCIDSI VEKILTPTSE VSWSHTYTRP GYAKRQHHSV PRDWWTEDIS DLDLDLFRCV  60
   61 ITAARSTFTL PPQLIGEALH VYTCRWLPYF KSNSHSGFSV KENEAALERH RRLVNTVVNM 120
  121 IPADKGSVSE GFLLRLVSIA SYVRASLTTK TELIRKSSLQ LEEATLEDLL LPSHSSSHLH 180
  181 RYDTDLVATV LESFLML

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [354-427]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WRRQSSAHLS SNNTQLLHSI RKVAKLIDSY LQAVAQDVHM PVSKFVSLSE AVPDIARQSH  60
   61 DRLYKAINIF LKVH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.862	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

Predicted Domain #4

Region A:
Residues: [428-559]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEISKEEKKR LCRSLDCQKL SAQVRAHAVK NERMPLRTVV QALFFDQESG SKGASSRSES  60
   61 QELFTRGKET PTDEHSMMHK LHLGPASTGK AKNVLEEGCK RGEEKTRSST DPKKIVWKGT 120
  121 GSEHKHHISR DR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits