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Protein Overview: Y5780_ARATH

General Information:
Name(s) found: Y5780_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • BTB/POZ domain-containing protein At5g47800 OS=Arabidopsis thaliana GN=At5g47800 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 559 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to light stimulus [IEA][ISS]
    Molecular Function: protein binding [IEA]
    signal transducer activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFMKIGTKP DTFYTQEASR ILITDTPNDL VIRINNTTYH LHRSCLVPKC GLLRRLCTDL  60
   61 EESDTVTIEL NDIPGGADAF ELCAKFCYDI TINLSAHNLV NALCASKFLR MSDSVDKGNL 120
  121 LPKLEAFFHS CILQGWKDSI VTLQSTTKLP EWCENLGIVR KCIDSIVEKI LTPTSEVSWS 180
  181 HTYTRPGYAK RQHHSVPRDW WTEDISDLDL DLFRCVITAA RSTFTLPPQL IGEALHVYTC 240
  241 RWLPYFKSNS HSGFSVKENE AALERHRRLV NTVVNMIPAD KGSVSEGFLL RLVSIASYVR 300
  301 ASLTTKTELI RKSSLQLEEA TLEDLLLPSH SSSHLHRYDT DLVATVLESF LMLWRRQSSA 360
  361 HLSSNNTQLL HSIRKVAKLI DSYLQAVAQD VHMPVSKFVS LSEAVPDIAR QSHDRLYKAI 420
  421 NIFLKVHPEI SKEEKKRLCR SLDCQKLSAQ VRAHAVKNER MPLRTVVQAL FFDQESGSKG 480
  481 ASSRSESQEL FTRGKETPTD EHSMMHKLHL GPASTGKAKN VLEEGCKRGE EKTRSSTDPK 540
  541 KIVWKGTGSE HKHHISRDR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..156] PSI-BLAST 19.522879 No description for 2nn2A was found.
    2 View Details [157..353] MSA 6.607993 View MSA. No confident structure predictions are available.
    3 View Details [354..427] deduced N/A Confident ab initio structure predictions are available.
    4 View Details [428..559] MSA 3.075987 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle