| Protein: | HHP3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 344 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HHP3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
265.0 | [0..1] | [343..1] |
|
Region A: Residues: [1-101] |
1 11 21 31 41 51
| | | | | |
1 MKRRRSAKKS PAMVTVTDWK GLDCGEETRI VRRLMKFEDL PEYLKDNEFI HNHYRCQWSL 60
61 KDTFLSAFSW HNETLNIWTH LIGFGIFLWM TVVSCLETTE I
|
| Detection Method: |  |
| Confidence: | 0.962 |
| Match: | 1b72A |
| Description: | Homeobox protein hox-b1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.26710947853871 | bayes_pls_golite062009 |
| DNA binding | 3.5661236857837 | bayes_pls_golite062009 |
| nucleic acid binding | 3.28624081508226 | bayes_pls_golite062009 |
| transcription factor activity | 3.04221826265814 | bayes_pls_golite062009 |
| binding | 2.29793406727052 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.55832666943106 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.50272778713438 | bayes_pls_golite062009 |
| transcription repressor activity | 1.19833889145906 | bayes_pls_golite062009 |
| transcription activator activity | 1.08850676850129 | bayes_pls_golite062009 |
| transcription factor binding | 0.746905816765278 | bayes_pls_golite062009 |
| protein binding | 0.695667926923332 | bayes_pls_golite062009 |
| molecular transducer activity | 0.329587569466149 | bayes_pls_golite062009 |
| signal transducer activity | 0.329587569466149 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.272291203478992 | bayes_pls_golite062009 |
| receptor activity | 0.216797217394257 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.208068704072557 | bayes_pls_golite062009 |
| chromatin binding | 0.20326378480068 | bayes_pls_golite062009 |
|
Region A: Residues: [102-344] |
1 11 21 31 41 51
| | | | | |
1 SLAGVFNGMA GVRICLSSNQ TLLHDSNVTH HISCLTSQGE AIPKWPWLVY LVGAMGCLIC 60
61 SSVSHLLACH SKRFNVFFWR LDYAGISLMI VASFFAPIYY AFSCHPNFRL LYLSSISILG 120
121 LLAIITLLSP ALSTPRFRPF RANLFLAMGS SAVIPATHVL CLYWDHPNVF IALGYEIATA 180
181 LSYFVGATFY VSRVPERWKP GAFDMAGHSH QIFHVFVVMG ALAHCVTTLL IIDFSRASPS 240
241 CGF
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
