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View Structure Prediction Details

Protein: TCPZA_ARATH
Organism: Arabidopsis thaliana
Length: 535 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TCPZA_ARATH.

Description E-value Query
Range		 Subject
Range
CH60_BACCN - 60 kDa chaperonin OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) GN=g...
 489.0 [0..9] [534..2]

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Predicted Domain #1
Region A:
Residues: [1-535] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVRVLNPNA EVLNKSAALH MTINAAKGLQ DVLKSNLGPK GTIKMLVGGS GDIKLTKDGN  60
   61 TLLKEMQIQN PTAIMIARTA VAQDDISGDG TTSTVIFIGE LMKQSERCID EGMHPRVLVD 120
  121 GFEIAKRATL QFLDTFKTPV VMGDEPDKEI LKMVARTTLR TKLYEGLADQ LTDIVVNSVL 180
  181 CIRKPQEPID LFMVEIMHMR HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CHILTCNVSL 240
  241 EYEKSEINAG FFYSNAEQRE AMVTAERRSV DERVQKIIEL KNKVCAGNDN SFVILNQKGI 300
  301 DPPSLDLLAR EGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTPDCLGWA GLVYEHVLGE 360
  361 EKYTFVEQVK NPHSCTILIK GPNDHTIAQI KDAVRDGLRS VKNTLEDECV VLGAGAFEVA 420
  421 ARQHLINEVK KTVQGRAQLG VEAFANALLV VPKTLAENAG LDTQDVIISL TSEHDKGNIV 480
  481 GLDLQDGEPV DPQLAGIFDN YSVKRQLINS GPVIASQLLL VDEVIRAGRN MRKPT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 130.0
Match: 1q3rA
Description: Crystal structure of the chaperonin from Thermococcus strain KS-1 (nucleotide-free form of single mutant)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
unfolded protein binding 7.60116801069598 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 3.6934849790316 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 3.40373598585301 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 3.28982639907979 bayes_pls_golite062009
binding 2.07154556649829 bayes_pls_golite062009
nucleic acid binding 1.67284737458957 bayes_pls_golite062009
DNA binding 1.60256620441721 bayes_pls_golite062009
transporter activity 1.27879339110564 bayes_pls_golite062009
transmembrane transporter activity 1.08697283907212 bayes_pls_golite062009
chaperone binding 0.91200031047441 bayes_pls_golite062009
substrate-specific transporter activity 0.828920415160435 bayes_pls_golite062009
ATPase activity, coupled 0.787685249362834 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.75018875403424 bayes_pls_golite062009
pyrophosphatase activity 0.69634667457441 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.682843768728088 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.680378643689288 bayes_pls_golite062009
protein binding 0.634982583867058 bayes_pls_golite062009
ATPase activity 0.584574936611857 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.573106450426516 bayes_pls_golite062009
catalytic activity 0.424959044318554 bayes_pls_golite062009
ion transmembrane transporter activity 0.280310103153739 bayes_pls_golite062009
active transmembrane transporter activity 0.275534581026027 bayes_pls_golite062009
hydrogen-exporting ATPase activity, phosphorylative mechanism 0.26275673855778 bayes_pls_golite062009
primary active transmembrane transporter activity 0.252704226951294 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.243984617084631 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.205808843369749 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.202279803135899 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.20198255686005 bayes_pls_golite062009
transferase activity 0.18639662517366 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.16424934648837 bayes_pls_golite062009
kinase activity 0.0871496920547826 bayes_pls_golite062009
cation transmembrane transporter activity 0.0778814959589007 bayes_pls_golite062009
hydrolase activity 0.0491351110520448 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle