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View Structure Prediction Details

Protein: MYB46_ARATH
Organism: Arabidopsis thaliana
Length: 280 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MYB46_ARATH.

Description E-value Query
Range
Subject
Range
gi|41619302, gi|... - gi|6850892|emb|CAB71055.1| putative transcription factor (MYB17) [Arabidopsis thaliana], gi|41619302...
195.0 [0..9] [276..3]

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Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKPEVAIAA STHQVKKMKK GLWSPEEDSK LMQYMLSNGQ GCWSDVAKNA GLQRCGKSCR  60
   61 LRWINYLRPD LKRGAFSPQE EDLIIRFHSI LGNRWSQIAA RLPGRTDNEI KNFWNSTIKK 120
  121 RLKKMSDTSN LINNSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.69897
Match: 1h88C
Description: c-Myb, DNA-binding domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.334577365229545 bayes_pls_golite062009
transcription regulator activity 0.0696342306231097 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [137-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSPNTASDSS SNSASSLDIK DIIGSFMSLQ EQGFVNPSLT HIQTNNPFPT GNMISHPCND  60
   61 DFTPYVDGIY GVNAGVQGEL YFPPLECEEG DWYNANINNH LDELNTNGSG NAPEGMRPVE 120
  121 EFWDLDQLMN TEVPSFYFNF KQSI

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.967
Match: 1ckrA
Description: DnaK
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.137874835530144 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle