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View Structure Prediction Details

Protein: CAF1E_ARATH
Organism: Arabidopsis thaliana
Length: 278 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAF1E_ARATH.

Description E-value Query
Range
Subject
Range
CNOT7_MOUSE - CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1
CNOT7_BOVIN - CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1
gi|189442761, gi... - gi|27671394|ref|XP_224894.1| PREDICTED: similar to CCR4-NOT transcription complex subunit 7 (CCR4-as...
353.0 [0..2] [259..12]

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Predicted Domain #1
Region A:
Residues: [1-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGEVWRWNK QAEMNSIRDC LKHCNSIAID TEFPGCLKET PMDASDEIRY RDMKFNVDNT  60
   61 HLIQLGLTLF GKGITKTWEI NLSDFNESKS LKNDKSIAFL KNNGLDLDKI REEGIGIEEF 120
  121 FMEFSQILNE KHGKMRWVTF QGSYDKAYLL KGLTRKPLPE TSKEFDETVQ QLLGRFVYDV 180
  181 KKMAGLCSGL SSRFGLQRIA DVLQMRRVGK AHHAGSDSEL TARVFTKLIF DLVNSRKEST 240
  241 GRRADDQQYQ LEQQQHQQQL MMTRCYIPIP VQGRNYVL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 93.154902
Match: 2d5rA
Description: No description for 2d5rA was found.

Predicted functions:

Term Confidence Notes
nuclease activity 3.11657409772275 bayes_pls_golite062009
ribonuclease activity 2.66669472409706 bayes_pls_golite062009
transcription regulator activity 2.20855917457806 bayes_pls_golite062009
nucleic acid binding 2.14285769817394 bayes_pls_golite062009
exonuclease activity 1.87925169250843 bayes_pls_golite062009
DNA binding 1.86594005896134 bayes_pls_golite062009
3'-5' exonuclease activity 1.44123900197846 bayes_pls_golite062009
transcription activator activity 1.43417601839369 bayes_pls_golite062009
exoribonuclease activity 1.41353777396851 bayes_pls_golite062009
binding 1.35497934205068 bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters 1.33509846387956 bayes_pls_golite062009
general RNA polymerase II transcription factor activity 1.32513822925426 bayes_pls_golite062009
catalytic activity 1.25233849524628 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 1.19753926150484 bayes_pls_golite062009
transcription factor activity 1.17659544650821 bayes_pls_golite062009
protein binding 1.08578027658199 bayes_pls_golite062009
endonuclease activity 0.991569665925888 bayes_pls_golite062009
3'-5'-exoribonuclease activity 0.98331180621651 bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 0.71760273606768 bayes_pls_golite062009
endoribonuclease activity, producing 5'-phosphomonoesters 0.708753843279937 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.615788727884275 bayes_pls_golite062009
endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 0.598360955770972 bayes_pls_golite062009
0.49473250705373 bayes_pls_golite062009
deoxyribonuclease activity 0.24906263529692 bayes_pls_golite062009
DNA-directed DNA polymerase activity 0.09423425042945 bayes_pls_golite062009
DNA polymerase activity 0.0189279348688405 bayes_pls_golite062009
endoribonuclease activity 0.016619833072142 bayes_pls_golite062009

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