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Protein Overview: gi|189442761, gi...

General Information:
Name(s) found: gi|27671394 [NCBI NR]
gi|189442761 [NCBI NR]
gi|157823359 [NCBI NR]
gi|149021352 [NCBI NR]
gi|109504183 [NCBI NR]
gi|109504181 [NCBI NR]
Description(s) found:
Found 21 descriptions.
SHOW ALL
  • gi|27671394|ref|XP_224894.1| PREDICTED: similar to CCR4-NOT transcription complex subunit 7 (CCR4-associated factor 1) (CAF1) [Rattus norvegicus] [NCBI NR]
  • gi|189442761|gb|AAI67766.1| CCR4-NOT transcription complex, subunit 7 [Rattus norvegicus] [NCBI NR]
  • gi|157823359|ref|NP_001100783.1| CCR4-NOT transcription complex, subunit 7 [Rattus norvegicus] [NCBI NR]
  • gi|149021352|gb|EDL78815.1| rCG59103 [Rattus norvegicus] [NCBI NR]
  • gi|109504183|ref|XP_001058476.1| PREDICTED: similar to CCR4-NOT transcription complex subunit 7 (CCR4-associated factor 1) (CAF1) isoform 4 [Rattus norvegicus] [NCBI NR]
  • gi|109504181|ref|XP_001058414.1| PREDICTED: similar to CCR4-NOT transcription complex subunit 7 (CCR4-associated factor 1) (CAF1) isoform 3 [Rattus norvegicus] [NCBI NR]
    • Organism: Rattus norvegicus
    Length: 285 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN][IDA][IEA]
    CCR4-NOT complex [UNKNOWN][IEA]
    Biological Process: positive regulation of transcription from RNA polymerase II promoter [UNKNOWN][IEA]
    Molecular Function: nucleic acid binding [IEA]
    protein binding [UNKNOWN][IPI]
    transcription activator activity [UNKNOWN][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAATVDHSQ RICEVWACNL DEEMKKIRQV IRKYNYVAMD TEFPGVVARP IGEFRSNADY  60
   61 QYQLLRCNVD LLKIIQLGLT FMNEQGEYPP GTSTWQFNFK FNLTEDMYAQ DSIELLTTSG 120
  121 IQFKKHEEEG IETQYFAELL MTSGVVLCEG VKWLSFHSGY DFGYLIKILT NSNLPEEELD 180
  181 FFEILRLFFP VIYDVKYLMK SCKNLKGGLQ EVAEQLELER IGPQHQAGSD SLLTGMAFFK 240
  241 MREMFFEDHI DDAKYCGHLY GLGSGSSYVQ NGTGNAYEEE ASKQS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..285] PSI-BLAST 115.0 No description for 2d5rA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nuclease activity
    		•  3.11657409772275 bayes_pls_golite062009
  • ribonuclease activity
    		•  2.66669472409706 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.20855917457806 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.14285769817394 bayes_pls_golite062009
  • exonuclease activity
    		•  1.87925169250843 bayes_pls_golite062009
  • DNA binding
    		•  1.86594005896134 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  1.44123900197846 bayes_pls_golite062009
  • transcription activator activity
    		•  1.43417601839369 bayes_pls_golite062009
  • exoribonuclease activity
    		•  1.41353777396851 bayes_pls_golite062009
  • binding
    		•  1.35497934205068 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  1.33509846387956 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.32513822925426 bayes_pls_golite062009
  • catalytic activity
    		•  1.25233849524628 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.19753926150484 bayes_pls_golite062009
  • transcription factor activity
    		•  1.17659544650821 bayes_pls_golite062009
  • protein binding
    		•  1.08578027658199 bayes_pls_golite062009
  • endonuclease activity
    		•  0.991569665925888 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.98331180621651 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.71760273606768 bayes_pls_golite062009
  • endoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.708753843279937 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.615788727884275 bayes_pls_golite062009
  • endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.598360955770972 bayes_pls_golite062009
    		• 0.49473250705373 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  0.24906263529692 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  0.09423425042945 bayes_pls_golite062009
  • DNA polymerase activity
    		•  0.0189279348688405 bayes_pls_golite062009
  • endoribonuclease activity
    		•  0.016619833072142 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle