Protein: | CAF2P_ARATH |
Organism: | Arabidopsis thaliana |
Length: | 564 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAF2P_ARATH.
Description | E-value | Query Range |
Subject Range |
|
444.0 | [0..11] | [560..18] |
|
442.0 | [0..35] | [546..10] |
|
431.0 | [0..24] | [561..29] |
|
376.0 | [0..9] | [466..72] |
Region A: Residues: [1-186] |
1 11 21 31 41 51 | | | | | | 1 MAIVASLRDI NLFSSLPSTP PMADSSSGTF RPAPPIPIPK YAPSNRNRNQ KTNHQTDTNP 60 61 KKPQSNPALK LPHHRTRYYK PVKEGVISSD GDRTILIGDS GVSYQLPGAP FEFQFSYSET 120 121 PKVKPVGIRE PAFMPFAPPT MPRPWTGKAP LKKSKKKIPL FDSFNPPPAG KSGVKYVEMP 180 181 GPLPFG |
Detection Method: | |
Confidence: | 1.1 |
Match: | 2j63A |
Description: | No description for 2j63A was found. |
Region A: Residues: [187-303] |
1 11 21 31 41 51 | | | | | | 1 RYPKEGMNRE EVLGEPLKRW EKGMLIKPHM HDNRQVNLGR DGFTHNMLEL IHSHWKRRRV 60 61 CKVRCKGVPT VDMNNVCRVL EEKTGGEIIH RVGGVVYLFR GRNYNYRTRP QYPLMLW |
Detection Method: | |
Confidence: | 32.39794 |
Match: | 1jo0A |
Description: | YhbY homologue HI1333 |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [304-432] |
1 11 21 31 41 51 | | | | | | 1 KPAAPVYPKL IQEVPEGLTK EEAHEFRVKG KSLRPICKLS KNGVYVSLVK DVRDAFELSS 60 61 LVKVDCPGLE PSDYKKIGAK LKELVPCVLL SFDDEQILMW RGREWKSRFV DNPLIPSLSE 120 121 TNTTNELDP |
Detection Method: | |
Confidence: | 3.23 |
Match: | 1rq8A |
Description: | Solution structure of the hypothetical protein SAV1595 from Staphylococcus aureus, a putative RNA binding protein |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [433-564] |
1 11 21 31 41 51 | | | | | | 1 SDKPSEEQTV ANPSTTISSP KMISLWQRAL ESSKAVILEE LDLGPDDLLK KVEELEGTSL 60 61 AAEHTYTAMV LSNTDGAAED YVDEKDRSEE YYSDIDDDFD DECSDDESLD PVGPVGSLPV 120 121 DKIVRKLRER LK |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.572 | a.74.1 | Cyclin-like |
View | Download | 0.496 | a.74.1 | Cyclin-like |
View | Download | 0.491 | a.74.1 | Cyclin-like |
View | Download | 0.376 | a.74.1 | Cyclin-like |
View | Download | 0.373 | a.74.1 | Cyclin-like |
View | Download | 0.372 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
View | Download | 0.350 | a.74.1 | Cyclin-like |
View | Download | 0.322 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |