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View Structure Prediction Details

Protein: ODPB2_ARATH
Organism: Arabidopsis thaliana
Length: 406 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ODPB2_ARATH.

Description E-value Query
Range
Subject
Range
gi|77387459, gi|... - gi|77463041|ref|YP_352545.1| pyruvate dehydrogenase subunit beta [Rhodobacter sphaeroides 2.4.1], gi...
360.0 [0..14] [405..73]

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Predicted Domain #1
Region A:
Residues: [1-406]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV  60
   61 RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM DRDPHVCVMG EDVGHYGGSY 120
  121 KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC 180
  181 GMLHYTSGGQ FTIPVVIRGP GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM 240
  241 KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ 300
  301 AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE 360
  361 NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA VEQLCQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.30103
Match: 1ik6A
Description: E1-beta subunit of pyruvate dehydrogenase, Pyr module; E1-beta subunit of pyruvate dehydrogenase, C-domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
pyruvate dehydrogenase activity 11.3856674722026 bayes_pls_golite062009
pyruvate dehydrogenase (acetyl-transferring) activity 11.0549577473177 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor 10.8180381281695 bayes_pls_golite062009
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity 7.00951713446616 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors 5.65146926050423 bayes_pls_golite062009
acetolactate synthase activity 4.51986503762195 bayes_pls_golite062009
alpha-ketoacid dehydrogenase activity 2.61614462349133 bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups 1.29819462996182 bayes_pls_golite062009
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer 0.667418924427388 bayes_pls_golite062009
binding 0.551586872853971 bayes_pls_golite062009
catalytic activity 0.545407789079971 bayes_pls_golite062009
oxidoreductase activity 0.281475773435032 bayes_pls_golite062009
pyruvate decarboxylase activity 0.198062360371269 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle