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View Structure Prediction Details

Protein: LAC12_ARATH
Organism: Arabidopsis thaliana
Length: 565 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LAC12_ARATH.

Description E-value Query
Range
Subject
Range
LAC5_ARATH - Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=1
495.0 [0..7] [565..8]

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Predicted Domain #1
Region A:
Residues: [1-565]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTVHTFSIL LFFCSLFSAS LIIAKVQHHD FVIQETPVKR LCKTRNAITV NGMFPGPTLE  60
   61 VNNGDTLEVK VHNRARYNIT IHWHGVRQIR TGWADGPEFV TQCPIRPGKS YTYRFTIQGQ 120
  121 EGTLWWHAHS SWLRATVYGA LIIHPTPGSS FPFPKPDRQT ALMLGEWWNA NPVDVINQAT 180
  181 RTGAAPNISD AYTINGQPGD LYNCSTKETV VVPINSGETS LLRVINAALN QPLFFTVANH 240
  241 KLTVVGADAS YLKPFTTKVL MLGPGQTTDV LLTADQPPKR YYIAARAYQS AQNAPFDNTT 300
  301 TTAILQYKKT TTTSKPIMPV LPAFNDTNTV TSFSRKFKSL RNVVVPKTID DNLFFTIGLG 360
  361 LDNCPKKFPK SRCQGLNGTR FTASMNNVSF VLPSNFSLLQ AHSNGIPGVF TTDFPSKPPV 420
  421 KFDYTGNNIS RALFQPVKGT KLYKLKYGSR VQVVLQDTNI VTSENHPIHL HGYDFYIVGE 480
  481 GFGNFNPKKD TSKFNLVDPP LRNTVAVPVN GWAVIRFVAD NPGVWLMHCH LDVHIKWGLA 540
  541 MAFLVDNGVG ELETLEAPPH DLPIC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 103.0
Match: 1aozA
Description: Ascorbate oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, oxidizing metal ions 6.65192723037124 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 6.31879033933655 bayes_pls_golite062009
cation transmembrane transporter activity 5.08231506697861 bayes_pls_golite062009
ion transmembrane transporter activity 4.97613096658411 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 4.59563513647911 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 4.5497559272853 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 3.81325448081642 bayes_pls_golite062009
copper ion binding 3.27145156911424 bayes_pls_golite062009
metal ion transmembrane transporter activity 3.07382952844477 bayes_pls_golite062009
transition metal ion transmembrane transporter activity 2.9428517783106 bayes_pls_golite062009
transporter activity 2.75690053147562 bayes_pls_golite062009
copper ion transmembrane transporter activity 2.70015092777938 bayes_pls_golite062009
substrate-specific transporter activity 2.68353223516483 bayes_pls_golite062009
transmembrane transporter activity 2.67027550825653 bayes_pls_golite062009
ferroxidase activity 2.11615717093435 bayes_pls_golite062009
oxidoreductase activity, oxidizing metal ions, oxygen as acceptor 2.11615717093435 bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity 1.88441243755534 bayes_pls_golite062009
iron ion transmembrane transporter activity 1.17954317549442 bayes_pls_golite062009
binding 1.14851914699653 bayes_pls_golite062009
heme-copper terminal oxidase activity 0.379596275876029 bayes_pls_golite062009
catalytic activity 0.363071622766357 bayes_pls_golite062009
cation binding 0.305777337672225 bayes_pls_golite062009
metal ion binding 0.305777337672225 bayes_pls_golite062009
ion binding 0.300057966011705 bayes_pls_golite062009
active transmembrane transporter activity 0.269767937058687 bayes_pls_golite062009
transition metal ion binding 0.262778393547427 bayes_pls_golite062009
primary active transmembrane transporter activity 0.246123492452788 bayes_pls_golite062009
cytochrome-c oxidase activity 0.222255654263847 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 0.222255654263847 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors 0.222255654263847 bayes_pls_golite062009
protein binding 0.19183671060378 bayes_pls_golite062009
receptor binding 0.0601969032951899 bayes_pls_golite062009
signal transducer activity 0.049534674746601 bayes_pls_golite062009
molecular transducer activity 0.049534674746601 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle