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View Structure Prediction Details

Protein: DEGP3_ARATH
Organism: Arabidopsis thaliana
Length: 559 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEGP3_ARATH.

Description E-value Query
Range
Subject
Range
DGP10_ARATH - Protease Do-like 10, mitochondrial OS=Arabidopsis thaliana GN=DEGP10 PE=2 SV=1
236.0 [0..57] [545..75]

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Predicted Domain #1
Region A:
Residues: [1-559]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLCVRTVS RFRSLSRALA PGFLLLHGNA VPKTAVFFRQ QSSNTRLFSS YTAPSGVEEN  60
   61 NSKSALKNKL PPGKEVSSKD AKEKITTSAI DLALNSVVKV FTVSSKPRLF QPWQITMQSE 120
  121 STGSGFVISG KKILTNAHVV ANQTSVKVRK HGSTTKYKAK VQAVGHECDL AILEIDNDKF 180
  181 WEGMNPLELG DIPSMQDTVY VVGYPKGGDT ISVSKGVVSR VGPIKYSHSG TELLAIQIDA 240
  241 AINNGNSGGP VIMGNKVAGV AFESLCYSDS IGYIIPTPVI RHFLNAIEES GEDVSFGSIN 300
  301 LTYQKMDNDQ LRKDFKMSDK MTGILINKIN PLSDVHKVLK KDDIILAIDG VPIGNDSSVH 360
  361 FRKKERITFK HLVSMKKPCE TALLKVLREG KEYEFNSSLK SVPPLVPKRQ YDKSASYYIF 420
  421 GGLVFLPLTK PYIDSSCVSE SALGKMPKKA GEQVVIISQI LEDDINTGYS IFEDFQVKKV 480
  481 NGVQVHNLKH LYKLVEECCT ETVRMDLEKD KVITLDYKSA KKVTSKILKS LKIPSAVSED 540
  541 LQPKQQNKRS KVPPKSKEH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.39794
Match: 1ky9A
Description: Protease Do (DegP, HtrA), C-terminal domains; Protease Do (DegP, HtrA), catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein binding 2.10639523340529 bayes_pls_golite062009
hydrolase activity 1.95262287761731 bayes_pls_golite062009
binding 1.92577219161709 bayes_pls_golite062009
peptidase activity 0.892956033345508 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.644798716305534 bayes_pls_golite062009
endopeptidase activity 0.323781287331288 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle