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View Structure Prediction Details

Protein: gi|12324510, gi|...
Organism: Arabidopsis thaliana
Length: 311 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12324510, gi|....

Description E-value Query
Range
Subject
Range
gi|87284072, gi|... - gi|87301104|ref|ZP_01083945.1| GTP-binding protein Era [Synechococcus sp. WH 5701], gi|87284072|gb|E...
173.0 [0..15] [300..36]

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Predicted Domain #1
Region A:
Residues: [1-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKGGAQQKG HSSKQAENIV LVGRTGNGKS ATGNSLIGKK VFASKAHASG VTMKCQTHGV  60
   61 VTKDGHKINV IDTPGLFDLS VSAEYISKEI VRCLTLAEGG IHAVLLVLSA RTRITQEEEN 120
  121 TLRTLQALFG SQILDYVVVV FTGGDVLEEC KETLEDYLGR DCPTFIKEVM RMSSNRKVVI 180
  181 DNKTHDEGKK AEQVHKLLSL VDDIRRSKCG EAYTDDTYHM IKEESEKLRK HHEELESKNY 240
  241 SEECAAEMKN QSLILYKENL KQMSEQLEKK LKDAAEAQEK ALSKMTQENN ELNLALKIHI 300
  301 PLPPITPCNI L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.0
Match: 1efcA
Description: Elongation factor Tu (EF-Tu), domain 2; Elongation factor Tu (EF-Tu); Elongation factor Tu (EF-Tu), N-terminal (G) domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.36550713198424 bayes_pls_golite062009
catalytic activity 0.234613562021476 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.166100211611062 bayes_pls_golite062009
pyrophosphatase activity 0.159702441149605 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.149170905385965 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.147838751017739 bayes_pls_golite062009
hydrolase activity 0.0436758932827116 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle